Gene: PTPN6

5777
HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1
protein tyrosine phosphatase, non-receptor type 6
protein-coding
12p13.31
Ensembl:ENSG00000111679 MIM:176883 Vega:OTTHUMG00000168518 UniprotKB:P29350
NC_000012.12
PubMed
ND
1   
NA (AD)  NA (ND)   (Frontal_Cortex)
2.774e-1 (AD)  8.131e-1 (ND)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
SPI10.958
SASH30.946
LAPTM50.938
LAIR10.937
HCK0.937
C3AR10.936
CMTM70.936
CD680.933
CYTH40.932
ABI30.931

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
ATP2C2-0.442
SLC7A4-0.441
MARCH4-0.428
NEUROD6-0.42
KCNIP3-0.414
ZNF835-0.413
MAGIX-0.413
WNT7A-0.41
TMEM179-0.406
ZSCAN1-0.405

Drugs/Compounds

    There is no DrugBank record for this gene !

ID Drug Name Action PubMed
C0493251,2-dithiol-3-thione"1,2-dithiol-3-thione results in decreased expression of PTPN6 mRNA"19162173
C44762116-(4-fluorophenoxy)lipoxin A416-(4-fluorophenoxy)lipoxin A4 promotes the reaction [PTPN6 protein binds to KDR protein]18193074
C44762116-(4-fluorophenoxy)lipoxin A416-(4-fluorophenoxy)lipoxin A4 promotes the reaction [VEGFA promotes the reaction [PTPN6 protein binds to KDR protein]]18193074
C1111182',3,3',4',5-pentachloro-4-hydroxybiphenyl"2',3,3',4',5-pentachloro-4-hydroxybiphenyl results in decreased expression of PTPN6 mRNA"19114083
C0109142,4-diaminotoluene"2,4-diaminotoluene results in increased expression of PTPN6 mRNA"20713471
C0235142,6-dinitrotoluene"2,6-dinitrotoluene affects the expression of PTPN6 mRNA"21346803
C5116212-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of PTPN6 mRNA]27546522
C4059432-(oxalylamino)benzoic acid2-(oxalylamino)benzoic acid analog results in decreased activity of PTPN6 protein10744717
C4059432-(oxalylamino)benzoic acid2-(oxalylamino)benzoic acid results in decreased activity of PTPN6 protein10744717
D000082AcetaminophenAcetaminophen results in decreased expression of PTPN6 mRNA29067470
C016601afimoxifeneafimoxifene results in decreased activity of PTPN6 protein17272397
D016604Aflatoxin B1Aflatoxin B1 results in decreased methylation of PTPN6 gene27153756
D000643Ammonium ChlorideAmmonium Chloride affects the expression of PTPN6 mRNA16483693
C031385anthranilic acid[oxovanadium IV binds to anthranilic acid analog] which results in decreased activity of PTPN6 protein22864521
D000967Antimony Sodium GluconateAntimony Sodium Gluconate results in decreased activity of PTPN6 protein12399974
D018501Antirheumatic AgentsAntirheumatic Agents results in decreased expression of PTPN6 mRNA24449571
C526219apple polyphenol extractapple polyphenol extract results in increased expression of PTPN6 mRNA18351577
D001151ArsenicArsenic affects the methylation of PTPN6 gene25304211
C006632arsenic trioxide[arsenic trioxide co-treated with decitabine] results in increased expression of PTPN6 mRNA24762999
C006632arsenic trioxidearsenic trioxide results in decreased methylation of and results in increased expression of PTPN619619438
C006632arsenic trioxidearsenic trioxide results in decreased methylation of PTPN6 promoter19950550
C006632arsenic trioxidearsenic trioxide results in increased expression of PTPN6 mRNA19950550|2381590
C030935benz(a)anthracenebenz(a)anthracene results in increased expression of PTPN6 mRNA26377693
D001564Benzo(a)pyreneBenzo(a)pyrene results in decreased expression of PTPN6 mRNA21569818
D001564Benzo(a)pyreneBenzo(a)pyrene results in increased expression of PTPN6 mRNA22228805
D004958EstradiolEstradiol results in increased expression of PTPN6 mRNA17578864
C472777bisperoxovanadiumPTPN6 protein affects the reaction [bisperoxovanadium results in increased expression of PTGS2 mRNA]12493747
C006780bisphenol Abisphenol A affects the expression of PTPN6 mRNA25181051
C006780bisphenol Abisphenol A results in increased expression of PTPN6 mRNA18180321
C005961bis(tri-n-butyltin)oxidebis(tri-n-butyltin)oxide results in increased phosphorylation of PTPN6 protein22174045
C005961bis(tri-n-butyltin)oxidebis(tri-n-butyltin)oxide results in increased expression of PTPN6 mRNA17553608
D000069286BortezomibBortezomib results in decreased expression of PTPN6 mRNA17659339
D020122tert-Butylhydroperoxidetert-Butylhydroperoxide results in increased expression of PTPN6 mRNA18804290
D007631ChlordeconeChlordecone results in increased expression of PTPN6 mRNA17578864
D002737ChloropreneChloroprene results in decreased expression of PTPN6 mRNA23125180
D002994ClofibrateClofibrate results in increased expression of PTPN6 mRNA17585979
D019327Copper SulfateCopper Sulfate results in decreased expression of PTPN6 mRNA19549813
D003471CuprizoneCuprizone results in increased expression of PTPN6 mRNA27523638
D003474CurcuminCurcumin results in increased expression of PTPN6 mRNA17198877
D016572CyclosporineCyclosporine results in decreased expression of PTPN6 mRNA20106945|2522440
D016572CyclosporineCyclosporine results in decreased expression of PTPN6 mRNA25224403
C515055darinaparsindarinaparsin results in decreased expression of PTPN6 protein25316819
C014347decitabine[arsenic trioxide co-treated with decitabine] results in increased expression of PTPN6 mRNA24762999
C014347decitabinedecitabine results in decreased methylation of PTPN6 promoter19551406
C014347decitabinedecitabine results in increased expression of PTPN6 mRNA17343198|1937955
C014347decitabinedecitabine results in increased expression of PTPN6 protein17343198|1937955
D002945Cisplatin[Cisplatin co-treated with jinfukang] results in increased expression of PTPN6 mRNA27392435
D002945CisplatinCisplatin promotes the reaction [jinfukang results in increased expression of PTPN6 mRNA]27392435
D002945CisplatinCisplatin results in increased expression of PTPN6 mRNA27392435
D002945Cisplatinjinfukang promotes the reaction [Cisplatin results in increased expression of PTPN6 mRNA]27392435
C036042dicyclohexyl phthalatedicyclohexyl phthalate affects the expression of PTPN6 mRNA26924002
C024629dimethyl phthalatedimethyl phthalate affects the expression of PTPN6 mRNA26924002
D004642EmodinEmodin results in increased expression of PTPN6 protein23848338
D004642EmodinPTPN6 mutant form inhibits the reaction [Emodin results in decreased phosphorylation of and results in decreased activity of STAT3 protein]23848338
D000431Ethanol[Fish Oils co-treated with Ethanol] results in increased expression of PTPN6 mRNA17347304
D005395Fish Oils[Fish Oils co-treated with Ethanol] results in increased expression of PTPN6 mRNA17347304
D005419FlavonoidsFlavonoids results in decreased expression of PTPN6 mRNA18035473
D004397FonofosFonofos results in increased methylation of PTPN6 promoter22847954
D005839GentamicinsGentamicins results in increased expression of PTPN6 mRNA22061828
D006861Hydrogen PeroxideHydrogen Peroxide affects the expression of PTPN6 mRNA20044591
D006861Hydrogen PeroxidePTPN6 protein inhibits the reaction [Hydrogen Peroxide results in increased expression of CCL20 protein]18441283
D006861Hydrogen PeroxidePTPN6 protein inhibits the reaction [Hydrogen Peroxide results in increased expression of CCL5 protein]18441283
D006861Hydrogen PeroxidePTPN6 protein inhibits the reaction [Hydrogen Peroxide results in decreased phosphorylation of NFKBIA protein]18441283
D006861Hydrogen PeroxidePTPN6 protein inhibits the reaction [Hydrogen Peroxide results in increased phosphorylation of and results in increased activity of STAT6 protein]18441283
D006861Hydrogen PeroxidePTPN6 protein results in decreased susceptibility to Hydrogen Peroxide18441283
C544151jinfukang[Cisplatin co-treated with jinfukang] results in increased expression of PTPN6 mRNA27392435
C544151jinfukangCisplatin promotes the reaction [jinfukang results in increased expression of PTPN6 mRNA]27392435
C544151jinfukangjinfukang promotes the reaction [Cisplatin results in increased expression of PTPN6 mRNA]27392435
C544151jinfukangjinfukang results in increased expression of PTPN6 mRNA27392435
C561695(+)-JQ1 compound(+)-JQ1 compound results in decreased expression of PTPN6 mRNA23086925
C008261lead acetatelead acetate results in decreased expression of PTPN6 mRNA22609695
D008070LipopolysaccharidesPTPN6 protein promotes the reaction [Lipopolysaccharides results in increased expression of IL6 mRNA]21422245
D008070LipopolysaccharidesPTPN6 protein promotes the reaction [Lipopolysaccharides results in increased expression of IL6 protein]21422245
D008070Lipopolysaccharides[[PTPN6 protein results in increased phosphorylation of MAPK1 protein] which results in increased activity of CEBPB protein] promotes the reaction [Lipopolysaccharides results in increased expression of IL6 protein]21422245
D008070Lipopolysaccharides[[PTPN6 protein results in increased phosphorylation of MAPK3 protein] which results in increased activity of CEBPB protein] promotes the reaction [Lipopolysaccharides results in increased expression of IL6 protein]21422245
C013598methoxyacetic acidmethoxyacetic acid affects the expression of PTPN6 mRNA20864626
D008731MethoxychlorMethoxychlor results in increased methylation of PTPN6 gene23303685
C517284monomethyl phthalatemonomethyl phthalate affects the expression of PTPN6 mRNA26924002
C524250N'-(11H-indolo(3,2-c)quinolin-6-yl)-N,N-dimethylethane-1,2-diamine"N'-(11H-indolo(3,2-c)quinolin-6-yl)-N,N-dimethylethane-1,2-diamine results in increased expression of PTPN6 protein"18638462
D037742Nanotubes, Carbon"Nanotubes, Carbon analog results in increased expression of PTPN6 mRNA"25554681
D037742Nanotubes, Carbon"Nanotubes, Carbon results in increased expression of PTPN6 mRNA"25554681
D009532NickelNickel results in increased expression of PTPN6 mRNA25583101
C029938nickel sulfatenickel sulfate results in increased expression of PTPN6 mRNA22714537
C507134ON 01910ON 01910 results in decreased expression of PTPN6 mRNA22351695
D009942Organometallic CompoundsOrganometallic Compounds results in decreased activity of PTPN6 protein22027948
C075743oxovanadium IV[oxovanadium IV binds to anthranilic acid analog] which results in decreased activity of PTPN6 protein22864521
C075743oxovanadium IV[oxovanadium IV binds to salicylideneaniline analog] which results in decreased activity of PTPN6 protein22864521
C075743oxovanadium IV[oxovanadium IV binds to Schiff Bases] which results in decreased activity of PTPN6 protein22864521
D010269ParaquatPTPN6 protein inhibits the reaction [Paraquat results in decreased expression of IL10 protein]18441283
D010269ParaquatPTPN6 protein inhibits the reaction [Paraquat results in increased expression of CCL20 protein]18441283
D010278ParathionParathion results in increased methylation of PTPN6 promoter22847954
C073402PD 123319PD 123319 affects the reaction [AGT protein promotes the reaction [PTPN6 protein binds to MTUS1 protein]]17068200
C006253pirinixic acidpirinixic acid results in increased expression of PTPN6 mRNA18301758|2081375
D010936Plant ExtractsPlant Extracts results in increased expression of PTPN6 mRNA18351577
D011084Polycyclic Aromatic HydrocarbonsPolycyclic Aromatic Hydrocarbons affects the expression of PTPN6 mRNA21133357
D011192Potassium DichromatePotassium Dichromate results in decreased expression of PTPN6 mRNA23608068
D020849Raloxifene HydrochlorideRaloxifene Hydrochloride results in decreased activity of PTPN6 protein17272397
C510217salicylideneaniline[oxovanadium IV binds to salicylideneaniline analog] which results in decreased activity of PTPN6 protein22864521
D012545Schiff Bases[oxovanadium IV binds to Schiff Bases] which results in decreased activity of PTPN6 protein22864521
D012643Selenium[Selenium co-treated with Vitamin E] results in increased expression of PTPN6 mRNA19244175
D012643SeleniumSelenium results in increased expression of PTPN6 mRNA19244175
D012822Silicon DioxideSilicon Dioxide analog results in decreased expression of PTPN6 mRNA25895662
D012834SilverSilver results in increased expression of PTPN6 mRNA27131904
C017947sodium arsenitesodium arsenite results in increased expression of PTPN6 protein19072884
D012965Sodium ChlorideSodium Chloride results in decreased expression of PTPN6 mRNA23634900
D012999SomanSoman results in increased expression of PTPN6 mRNA19281266
C012568terbufosterbufos results in increased methylation of PTPN6 promoter22847954
D013749Tetrachlorodibenzodioxin2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of PTPN6 mRNA]27546522
D013749TetrachlorodibenzodioxinTetrachlorodibenzodioxin promotes the reaction [AHR protein binds to PTPN6 promoter]27546522
D013749TetrachlorodibenzodioxinTetrachlorodibenzodioxin results in increased expression of PTPN6 mRNA27546522
D013749TetrachlorodibenzodioxinTetrachlorodibenzodioxin results in increased expression of PTPN6 protein27546522
D013749TetrachlorodibenzodioxinTetrachlorodibenzodioxin affects the expression of PTPN6 mRNA21570461
D013749TetrachlorodibenzodioxinTetrachlorodibenzodioxin promotes the reaction [AHR protein binds to PTPN6 gene]20819909
D013749TetrachlorodibenzodioxinTetrachlorodibenzodioxin results in increased expression of PTPN6 mRNA20819909
C009495titanium dioxidetitanium dioxide results in increased expression of PTPN6 mRNA23557971
D014028Tobacco Smoke PollutionTobacco Smoke Pollution results in decreased methylation of PTPN6 gene26756918
C046488trimethyltintrimethyltin results in increased expression of PTPN6 mRNA20833246
D014635Valproic AcidValproic Acid results in decreased expression of PTPN6 mRNA29154799
D014635Valproic AcidValproic Acid results in increased expression of PTPN6 mRNA23527032
D014635Valproic AcidValproic Acid results in increased methylation of PTPN6 gene29154799
D000068756ValsartanValsartan promotes the reaction [AGT protein promotes the reaction [PTPN6 protein binds to MTUS1 protein]]17068200
C025643vinclozolinvinclozolin results in increased expression of PTPN6 mRNA20566332
D014801Vitamin AVitamin A affects the localization of and affects the phosphorylation of PTPN6 protein15963505
D014810Vitamin E[Selenium co-treated with Vitamin E] results in increased expression of PTPN6 mRNA19244175
D014810Vitamin EVitamin E results in increased expression of PTPN6 mRNA19244175
D015032ZincZinc results in decreased activity of PTPN6 protein14644152

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO:0001784phosphotyrosine residue binding-IMP12051764  
GO:0001784phosphotyrosine residue binding-IPI11986327  12051764  
GO:0004725protein tyrosine phosphatase activity-IMP17562706  
GO:0004725protein tyrosine phosphatase activity-TAS-  
GO:0005001transmembrane receptor protein tyrosine phosphatase activity-IDA11266449  
GO:0005515protein binding-IPI7228577  7528537  7528577  8114715  8574854  8577729  
8627166  8648092  8691146  8691154  9148918  9285411  
9603468  9774457  9842885  10206955  10540326  10556798  
10660620  10764762  11162587  11266449  11489943  11907092  
16254138  16339535  17416557  17562706  17947393  18086677  
18424730  18604210  18802077  19167335  19838216  19843936  
20351292  20933011  22624718  23001144  23112346  23696226  
24642916  25416956  25535246  26755705  
GO:0017124SH3 domain binding-IEA-  
GO:0019901protein kinase binding-IPI11266449  
GO:0042169SH2 domain binding-IEA-  
GO:0050839cell adhesion molecule binding-IEA-  
GO:0140031phosphorylation-dependent protein binding-IPI12163025  
GO ID GO Term Qualifier Evidence PubMed
GO:0002244hematopoietic progenitor cell differentiation-IEA-  
GO:0002924negative regulation of humoral immune response mediated by circulating immunoglobulin-IEA-  
GO:0006470protein dephosphorylation-IDA11266449  
GO:0006915apoptotic process-TAS10506221  
GO:0007186G-protein coupled receptor signaling pathway-TAS7781604  
GO:0008283cell proliferation-IDA11266449  
GO:0008284positive regulation of cell proliferation-IMP19749791  19838216  
GO:0008285negative regulation of cell proliferation-NAS10497187  
GO:0014068positive regulation of phosphatidylinositol 3-kinase signaling-IMP19838216  
GO:0018108peptidyl-tyrosine phosphorylation-IDA9285411  18802077  
GO:0019221cytokine-mediated signaling pathway-TAS-  
GO:0030154cell differentiation-IDA11266449  
GO:0030168platelet activation-TAS-  
GO:0030220platelet formation-IEA-  
GO:0031295T cell costimulation-TAS-  
GO:0033277abortive mitotic cell cycle-IEA-  
GO:0033630positive regulation of cell adhesion mediated by integrin-IEA-  
GO:0035335peptidyl-tyrosine dephosphorylation-IMP17562706  
GO:0035556intracellular signal transduction-IEA-  
GO:0035855megakaryocyte development-IEA-  
GO:0042130negative regulation of T cell proliferation-IEA-  
GO:0042267natural killer cell mediated cytotoxicity-IEA-  
GO:0043312neutrophil degranulation-TAS-  
GO:0043407negative regulation of MAP kinase activity-IEA-  
GO:0045577regulation of B cell differentiation-IEA-  
GO:0050732negative regulation of peptidyl-tyrosine phosphorylation-IMP19749791  
GO:0050853B cell receptor signaling pathway-IEA-  
GO:0050859negative regulation of B cell receptor signaling pathway-IEA-  
GO:0050860negative regulation of T cell receptor signaling pathway-IEA-  
GO:0050900leukocyte migration-TAS-  
GO:0051279regulation of release of sequestered calcium ion into cytosol-IEA-  
GO:0060338regulation of type I interferon-mediated signaling pathway-TAS-  
GO:0070372regulation of ERK1 and ERK2 cascade-IDA11266449  
GO:0070527platelet aggregation-IEA-  
GO:0071345cellular response to cytokine stimulus-TAS-  
GO:2000045regulation of G1/S transition of mitotic cell cycle-IMP19838216  
GO ID GO Term Qualifier Evidence PubMed
GO:0005576extracellular region-TAS-  
GO:0005634nucleus-IDA19838216  
GO:0005654nucleoplasm-TAS-  
GO:0005730nucleolus-IDA-  
GO:0005737cytoplasm-IDA10940933  19838216  
GO:0005829cytosol-TAS-  
GO:0005911cell-cell junction-IEA-  
GO:0016020membrane-TAS10506221  
GO:0032991protein-containing complex-IMP17562706  
GO:0035580specific granule lumen-TAS-  
GO:0042105alpha-beta T cell receptor complex-IEA-  
GO:0070062extracellular exosome-HDA19056867  20458337  
GO:1904724tertiary granule lumen-TAS-  
KEGG ID KEGG Term
hsa04520Adherens junction
hsa04630Jak-STAT signaling pathway
hsa04650Natural killer cell mediated cytotoxicity
hsa04660T cell receptor signaling pathway
hsa04662B cell receptor signaling pathway
hsa05140Leishmaniasis
Reactome ID Reactome Term Evidence
R-HSA-109582HemostasisTAS
R-HSA-114604GPVI-mediated activation cascadeTAS
R-HSA-1280215Cytokine Signaling in Immune systemTAS
R-HSA-1280215Cytokine Signaling in Immune systemIEA
R-HSA-1280218Adaptive Immune SystemIEA
R-HSA-1280218Adaptive Immune SystemTAS
R-HSA-1433557Signaling by SCF-KITTAS
R-HSA-1433559Regulation of KIT signalingTAS
R-HSA-1500931Cell-Cell communicationIEA
R-HSA-162582Signal TransductionTAS
R-HSA-168249Innate Immune SystemTAS
R-HSA-168256Immune SystemIEA
R-HSA-168256Immune SystemTAS
R-HSA-202733Cell surface interactions at the vascular wallTAS
R-HSA-210990PECAM1 interactionsTAS
R-HSA-388841Costimulation by the CD28 familyTAS
R-HSA-389948PD-1 signalingTAS
R-HSA-391160Signal regulatory protein family interactionsIEA
R-HSA-418346Platelet homeostasisTAS
R-HSA-432142Platelet sensitization by LDLTAS
R-HSA-446652Interleukin-1 family signalingTAS
R-HSA-449147Signaling by InterleukinsTAS
R-HSA-451927Interleukin-2 family signalingTAS
R-HSA-512988Interleukin-3, 5 and GM-CSF signalingTAS
R-HSA-5690714CD22 mediated BCR regulationTAS
R-HSA-6798695Neutrophil degranulationTAS
R-HSA-76002Platelet activation, signaling and aggregationTAS
R-HSA-877300Interferon gamma signalingTAS
R-HSA-877300Interferon gamma signalingIEA
R-HSA-877312Regulation of IFNG signalingIEA
R-HSA-9006934Signaling by Receptor Tyrosine KinasesTAS
R-HSA-9008059Interleukin-37 signalingTAS
R-HSA-909733Interferon alpha/beta signalingTAS
R-HSA-912526Interleukin receptor SHC signalingTAS
R-HSA-912694Regulation of IFNA signalingTAS
R-HSA-913531Interferon SignalingTAS
R-HSA-913531Interferon SignalingIEA
R-HSA-982772Growth hormone receptor signalingIEA
R-HSA-983695Antigen activates B Cell Receptor (BCR) leading to generation of second messengersIEA
R-HSA-983695Antigen activates B Cell Receptor (BCR) leading to generation of second messengersTAS
R-HSA-983705Signaling by the B Cell Receptor (BCR)IEA
R-HSA-983705Signaling by the B Cell Receptor (BCR)TAS

Interactions (STRING v10.5, Interaction Score >= 0.400)

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal
24704585CpG sites associated with cigarette smoking: analysis of epigenome-wide data from the Sister Study. (2014 Jul)Harlid SEnviron Health Perspect