Gene: LINC00839

84856
-
long intergenic non-protein coding RNA 839
ncRNA
10q11.21
Ensembl:ENSG00000185904
NC_000010.11
SNP Mapped
1   ANCO-SNPs
AD
0   
5.480e-1 (AD)  1.201e-1 (ND)   (Frontal_Cortex)
2.986e-1 (AD)  1.505e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs1889310chr10:42486247 (GRCh38.p7)A>Talcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
SNAP470.739
AP2A20.722
CADM30.719
MIEF20.719
ALKBH40.717
VPS26B0.715
EXTL30.714
PPP5C0.714
UQCC10.714
PI4K2A0.713

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
OR4F5-0.443
TFPI2-0.397
OR4F29-0.396
RAI14-0.371
CNN2-0.371
TMEM154-0.371
SIX2-0.365
RUNX3-0.361
MBNL3-0.358
PPBP-0.357

Drugs/Compounds

    There is no DrugBank record for this gene !

ID Drug Name Action PubMed
D000447AldehydesAldehydes results in increased expression of LINC00839 mRNA25014914
C018475butyraldehydebutyraldehyde results in increased expression of LINC00839 mRNA26079696
D002945CisplatinCisplatin results in increased expression of LINC00839 mRNA27392435
C046012pentanalpentanal results in increased expression of LINC00839 mRNA26079696
C005556propionaldehydepropionaldehyde results in increased expression of LINC00839 mRNA26079696

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal