SNP Detail Info-rs10012206

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.113955964T>C
GRCh37.p13 chr 4	NC_000004.11:g.114877120T>C

Molecule type	Change	Amino acid[Codon]	SO Term
ARSJ transcript variant 1	NM_024590.3:c.	N/A	Intron Variant
ARSJ transcript variant X2	XM_005263212.4:c.	N/A	Intron Variant
ARSJ transcript variant X9	XM_011532239.2:c.	N/A	Intron Variant
ARSJ transcript variant X1	XM_017008592.1:c.	N/A	Intron Variant
ARSJ transcript variant X4	XM_017008593.1:c.	N/A	Intron Variant
ARSJ transcript variant X5	XM_017008594.1:c.	N/A	Intron Variant
ARSJ transcript variant X6	XM_017008595.1:c.	N/A	Intron Variant
ARSJ transcript variant X8	XM_017008596.1:c.	N/A	Intron Variant
ARSJ transcript variant X9	XM_017008597.1:c.	N/A	Intron Variant
ARSJ transcript variant X10	XM_017008598.1:c.	N/A	Intron Variant
ARSJ transcript variant X11	XM_017008599.1:c.	N/A	Intron Variant
ARSJ transcript variant X13	XM_017008600.1:c.	N/A	Intron Variant
ARSJ transcript variant X3	XM_011532238.2:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.796	C=0.204
1000Genomes	American	Sub	694	T=0.990	C=0.010
1000Genomes	East Asian	Sub	1008	T=1.000	C=0.000
1000Genomes	Europe	Sub	1006	T=0.999	C=0.001
1000Genomes	Global	Study-wide	5008	T=0.944	C=0.056
1000Genomes	South Asian	Sub	978	T=1.000	C=0.000
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.999	C=0.001
The Genome Aggregation Database	African	Sub	8724	T=0.841	C=0.159
The Genome Aggregation Database	American	Sub	838	T=0.990	C=0.010
The Genome Aggregation Database	East Asian	Sub	1576	T=1.000	C=0.000
The Genome Aggregation Database	Europe	Sub	18496	T=0.999	C=0.000
The Genome Aggregation Database	Global	Study-wide	29936	T=0.953	C=0.047
The Genome Aggregation Database	Other	Sub	302	T=1.000	C=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.928	C=0.071
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.999	C=0.001

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs10012206	0.000184	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr4	114901991	114902118	E069	24871
chr4	114842335	114842886	E074	-34234
chr4	114901991	114902118	E074	24871

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr4	114899044	114899110	E067	21924
chr4	114899190	114899342	E067	22070
chr4	114899429	114899479	E067	22309
chr4	114899535	114901708	E067	22415
chr4	114897541	114897774	E068	20421
chr4	114897953	114899028	E068	20833
chr4	114899044	114899110	E068	21924
chr4	114899190	114899342	E068	22070
chr4	114899429	114899479	E068	22309
chr4	114899535	114901708	E068	22415
chr4	114899044	114899110	E069	21924
chr4	114899190	114899342	E069	22070
chr4	114899429	114899479	E069	22309
chr4	114899535	114901708	E069	22415
chr4	114899190	114899342	E071	22070
chr4	114899429	114899479	E071	22309
chr4	114899535	114901708	E071	22415
chr4	114901746	114901853	E071	24626
chr4	114897130	114897208	E072	20010
chr4	114897354	114897433	E072	20234
chr4	114897541	114897774	E072	20421
chr4	114897953	114899028	E072	20833
chr4	114899044	114899110	E072	21924
chr4	114899190	114899342	E072	22070
chr4	114899429	114899479	E072	22309
chr4	114899535	114901708	E072	22415
chr4	114901746	114901853	E072	24626
chr4	114899535	114901708	E073	22415
chr4	114901746	114901853	E073	24626
chr4	114899535	114901708	E074	22415
chr4	114899535	114901708	E082	22415

rs10012206