rs10029539

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0436 (13046/29866,GnomAD)
C=0363 (10572/29118,TOPMED)
C=0419 (2098/5008,1000G)
T==0468 (1802/3854,ALSPAC)
T==0480 (1781/3708,TWINSUK)
chr4:31790330 (GRCh38.p7) (4p15.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.31790330T>C
GRCh37.p13 chr 4NC_000004.11:g.31791952T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.804C=0.196
1000GenomesAmericanSub694T=0.570C=0.430
1000GenomesEast AsianSub1008T=0.386C=0.614
1000GenomesEuropeSub1006T=0.502C=0.498
1000GenomesGlobalStudy-wide5008T=0.581C=0.419
1000GenomesSouth AsianSub978T=0.570C=0.430
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.468C=0.532
The Genome Aggregation DatabaseAfricanSub8702T=0.776C=0.224
The Genome Aggregation DatabaseAmericanSub834T=0.520C=0.480
The Genome Aggregation DatabaseEast AsianSub1592T=0.373C=0.627
The Genome Aggregation DatabaseEuropeSub18438T=0.482C=0.517
The Genome Aggregation DatabaseGlobalStudy-wide29866T=0.563C=0.436
The Genome Aggregation DatabaseOtherSub300T=0.490C=0.510
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.636C=0.363
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.480C=0.520
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs100295390.00031alcohol dependence20201924

eQTL of rs10029539 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10029539 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.