rs10037670

Homo sapiens
A>G
SAP30L-AS1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0208 (6237/29970,GnomAD)
G=0198 (5791/29118,TOPMED)
G=0210 (1051/5008,1000G)
G=0195 (750/3854,ALSPAC)
G=0208 (773/3708,TWINSUK)
chr5:154431930 (GRCh38.p7) (5q33.2)
AD
GWASCatalog
1   publication(s)
See rs on genome
38 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.154431930A>G
GRCh37.p13 chr 5NC_000005.9:g.153811490A>G

Gene: SAP30L-AS1, SAP30L antisense RNA 1 (head to head)(minus strand)

Molecule type Change Amino acid[Codon] SO Term
SAP30L-AS1 transcriptNR_037897.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.728G=0.272
1000GenomesAmericanSub694A=0.800G=0.200
1000GenomesEast AsianSub1008A=0.897G=0.103
1000GenomesEuropeSub1006A=0.806G=0.194
1000GenomesGlobalStudy-wide5008A=0.790G=0.210
1000GenomesSouth AsianSub978A=0.740G=0.260
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.805G=0.195
The Genome Aggregation DatabaseAfricanSub8720A=0.765G=0.235
The Genome Aggregation DatabaseAmericanSub838A=0.820G=0.180
The Genome Aggregation DatabaseEast AsianSub1622A=0.887G=0.113
The Genome Aggregation DatabaseEuropeSub18490A=0.794G=0.205
The Genome Aggregation DatabaseGlobalStudy-wide29970A=0.791G=0.208
The Genome Aggregation DatabaseOtherSub300A=0.820G=0.180
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.801G=0.198
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.792G=0.208
PMID Title Author Journal
23942779A genome-wide association study of behavioral disinhibition.McGue MBehav Genet

P-Value

SNP ID p-value Traits Study
rs100376704E-06alcohol dependence23942779

eQTL of rs10037670 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10037670 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr5153829393153829511E06717903
chr5153838713153838790E06727223
chr5153785336153785411E068-26079
chr5153829393153829511E06817903
chr5153770659153770761E070-40729
chr5153777252153777843E070-33647
chr5153783928153784115E070-27375
chr5153784213153784333E070-27157
chr5153785336153785411E070-26079
chr5153797494153797544E070-13946
chr5153797858153798413E070-13077
chr5153798477153798557E070-12933
chr5153830980153831030E07019490
chr5153831706153831760E07020216
chr5153838437153838487E07026947
chr5153838713153838790E07027223
chr5153774167153774266E071-37224
chr5153774328153774394E071-37096
chr5153774479153774558E071-36932
chr5153829393153829511E07117903
chr5153838437153838487E07126947
chr5153838713153838790E07127223
chr5153773963153774109E074-37381
chr5153774167153774266E074-37224
chr5153774328153774394E074-37096
chr5153774479153774558E074-36932
chr5153774651153774731E074-36759
chr5153775102153775609E074-35881
chr5153784462153784519E074-26971
chr5153784213153784333E081-27157
chr5153784462153784519E081-26971
chr5153797494153797544E081-13946
chr5153797858153798413E081-13077
chr5153784213153784333E082-27157
chr5153788045153788129E082-23361
chr5153788365153788726E082-22764
chr5153797494153797544E082-13946
chr5153829393153829511E08217903







Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr5153824193153826960E06712703
chr5153824193153826960E06812703
chr5153824193153826960E06912703
chr5153824193153826960E07012703
chr5153824193153826960E07112703
chr5153824193153826960E07212703
chr5153824193153826960E07312703
chr5153824193153826960E07412703
chr5153824193153826960E08112703
chr5153824193153826960E08212703