SNP Detail Info-rs1004018

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.46886666G>A
GRCh37.p13 chr 6	NC_000006.11:g.46854403G>A

Molecule type	Change	Amino acid[Codon]	SO Term
ADGRF5 transcript variant 2	NM_001098518.1:c.	N/A	Intron Variant
ADGRF5 transcript variant 1	NM_015234.4:c.	N/A	Intron Variant
ADGRF5 transcript variant X1	XM_005248892.2:c.	N/A	Intron Variant
ADGRF5 transcript variant X2	XM_005248893.3:c.	N/A	Intron Variant
ADGRF5 transcript variant X3	XM_005248894.3:c.	N/A	Intron Variant
ADGRF5 transcript variant X4	XM_005248895.3:c.	N/A	Intron Variant
ADGRF5 transcript variant X6	XM_011514353.2:c.	N/A	Intron Variant
ADGRF5 transcript variant X11	XM_011514354.2:c.	N/A	Intron Variant
ADGRF5 transcript variant X5	XM_017010418.1:c.	N/A	Intron Variant
ADGRF5 transcript variant X7	XM_017010419.1:c.	N/A	Intron Variant
ADGRF5 transcript variant X8	XM_017010420.1:c.	N/A	Intron Variant
ADGRF5 transcript variant X9	XM_017010421.1:c.	N/A	Intron Variant
ADGRF5 transcript variant X10	XM_017010422.1:c.	N/A	Intron Variant
ADGRF5 transcript variant X12	XM_017010423.1:c.	N/A	Intron Variant
ADGRF5 transcript variant X13	XM_017010424.1:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.908	A=0.092
1000Genomes	American	Sub	694	G=0.810	A=0.190
1000Genomes	East Asian	Sub	1008	G=0.831	A=0.169
1000Genomes	Europe	Sub	1006	G=0.855	A=0.145
1000Genomes	Global	Study-wide	5008	G=0.848	A=0.152
1000Genomes	South Asian	Sub	978	G=0.800	A=0.200
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.815	A=0.185
The Genome Aggregation Database	African	Sub	8720	G=0.859	A=0.141
The Genome Aggregation Database	American	Sub	838	G=0.770	A=0.230
The Genome Aggregation Database	East Asian	Sub	1610	G=0.825	A=0.175
The Genome Aggregation Database	Europe	Sub	18472	G=0.830	A=0.169
The Genome Aggregation Database	Global	Study-wide	29942	G=0.836	A=0.163
The Genome Aggregation Database	Other	Sub	302	G=0.830	A=0.170
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.835	A=0.164
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.826	A=0.174

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs1004018	0.000523	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	46816376	46817408	E068	-36995
chr6	46817895	46817945	E068	-36458

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr6	46888778	46888855	E067	34375
chr6	46888969	46889102	E067	34566
chr6	46889264	46889369	E067	34861
chr6	46889619	46889882	E067	35216
chr6	46888778	46888855	E068	34375
chr6	46888969	46889102	E068	34566
chr6	46889264	46889369	E068	34861
chr6	46888778	46888855	E069	34375
chr6	46888969	46889102	E069	34566
chr6	46889264	46889369	E069	34861
chr6	46888778	46888855	E071	34375
chr6	46888969	46889102	E071	34566
chr6	46889264	46889369	E071	34861
chr6	46888778	46888855	E072	34375
chr6	46888969	46889102	E072	34566
chr6	46889264	46889369	E072	34861
chr6	46889619	46889882	E072	35216
chr6	46888778	46888855	E073	34375
chr6	46888969	46889102	E073	34566
chr6	46889264	46889369	E073	34861

rs1004018