SNP Detail Info-rs10041088

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0282 (8436/29868,GnomAD)
G==0271 (7896/29118,TOPMED)
G==0247 (1238/5008,1000G)
G==0301 (1160/3854,ALSPAC)
G==0298 (1106/3708,TWINSUK)

Position: chr5:165640813 (GRCh38.p7) (5q34)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 6 Enhancers around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.165640813G>A
GRCh37.p13 chr 5	NC_000005.9:g.165067818G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.283	A=0.717
1000Genomes	American	Sub	694	G=0.290	A=0.710
1000Genomes	East Asian	Sub	1008	G=0.158	A=0.842
1000Genomes	Europe	Sub	1006	G=0.274	A=0.726
1000Genomes	Global	Study-wide	5008	G=0.247	A=0.753
1000Genomes	South Asian	Sub	978	G=0.230	A=0.770
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.301	A=0.699
The Genome Aggregation Database	African	Sub	8702	G=0.245	A=0.755
The Genome Aggregation Database	American	Sub	828	G=0.280	A=0.720
The Genome Aggregation Database	East Asian	Sub	1608	G=0.113	A=0.887
The Genome Aggregation Database	Europe	Sub	18428	G=0.316	A=0.683
The Genome Aggregation Database	Global	Study-wide	29868	G=0.282	A=0.717
The Genome Aggregation Database	Other	Sub	302	G=0.220	A=0.780
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.271	A=0.728
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.298	A=0.702

PMID	Title	Author	Journal
22377092	ANAPC1 and SLCO3A1 are associated with nicotine dependence: meta-analysis of genome-wide association studies.	Wang KS	Drug Alcohol Depend

SNP ID	p-value	Traits	Study
rs10041088	6.36E-05	nicotine dependence (smoking)	22377092

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr5	165057220	165057799	E068	-10019
chr5	165057220	165057799	E070	-10019
chr5	165058426	165058486	E070	-9332
chr5	165059443	165059502	E070	-8316
chr5	165057220	165057799	E074	-10019
chr5	165057220	165057799	E081	-10019

rs10041088