| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 5 | NC_000005.10:g.63737891A>G |
| GRCh37.p13 chr 5 | NC_000005.9:g.63033718A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.741 | G=0.259 |
| 1000Genomes | American | Sub | 694 | A=0.850 | G=0.150 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.984 | G=0.016 |
| 1000Genomes | Europe | Sub | 1006 | A=0.803 | G=0.197 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.852 | G=0.148 |
| 1000Genomes | South Asian | Sub | 978 | A=0.920 | G=0.080 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.790 | G=0.210 |
| The Genome Aggregation Database | African | Sub | 8708 | A=0.763 | G=0.237 |
| The Genome Aggregation Database | American | Sub | 834 | A=0.840 | G=0.160 |
| The Genome Aggregation Database | East Asian | Sub | 1580 | A=0.967 | G=0.033 |
| The Genome Aggregation Database | Europe | Sub | 18468 | A=0.809 | G=0.190 |
| The Genome Aggregation Database | Global | Study-wide | 29892 | A=0.804 | G=0.195 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.780 | G=0.220 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.777 | G=0.222 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.784 | G=0.216 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23216389 | Genome-wide significant association signals in IPO11-HTR1A region specific for alcohol and nicotine codependence. | Zuo L | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs10042968 | 0.0000008 | alcohol and nictotine co-dependence | 23216389 |
| rs10042968 | 8.00E-07 | alcohol and nicotine co-dependence | 23216389 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr5 | 63067886 | 63067974 | E081 | 34168 |
| chr5 | 63068082 | 63068414 | E081 | 34364 |
| chr5 | 63068477 | 63068538 | E081 | 34759 |
| chr5 | 62983767 | 62983849 | E082 | -49869 |
| chr5 | 62983854 | 62983965 | E082 | -49753 |
| chr5 | 62984057 | 62984141 | E082 | -49577 |