Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 5 | NC_000005.10:g.91834748A>G |
GRCh37.p13 chr 5 | NC_000005.9:g.91130565A>G |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.762 | G=0.238 |
1000Genomes | American | Sub | 694 | A=0.980 | G=0.020 |
1000Genomes | East Asian | Sub | 1008 | A=1.000 | G=0.000 |
1000Genomes | Europe | Sub | 1006 | A=0.999 | G=0.001 |
1000Genomes | Global | Study-wide | 5008 | A=0.934 | G=0.066 |
1000Genomes | South Asian | Sub | 978 | A=1.000 | G=0.000 |
The Genome Aggregation Database | African | Sub | 8722 | A=0.805 | G=0.195 |
The Genome Aggregation Database | American | Sub | 838 | A=0.990 | G=0.010 |
The Genome Aggregation Database | East Asian | Sub | 1600 | A=1.000 | G=0.000 |
The Genome Aggregation Database | Europe | Sub | 18504 | A=0.999 | G=0.000 |
The Genome Aggregation Database | Global | Study-wide | 29966 | A=0.942 | G=0.057 |
The Genome Aggregation Database | Other | Sub | 302 | A=1.000 | G=0.000 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.907 | G=0.092 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs10057238 | 0.0003 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr5 | 91160604 | 91160668 | E070 | 30039 |
chr5 | 91160887 | 91160972 | E070 | 30322 |
chr5 | 91161134 | 91161239 | E070 | 30569 |
chr5 | 91120004 | 91120070 | E081 | -10495 |
chr5 | 91120223 | 91120571 | E081 | -9994 |
chr5 | 91120613 | 91120741 | E081 | -9824 |
chr5 | 91134830 | 91135621 | E081 | 4265 |
chr5 | 91135667 | 91136055 | E081 | 5102 |
chr5 | 91136194 | 91136284 | E081 | 5629 |
chr5 | 91136390 | 91136500 | E081 | 5825 |
chr5 | 91136502 | 91136876 | E081 | 5937 |
chr5 | 91137079 | 91137129 | E081 | 6514 |
chr5 | 91137494 | 91137695 | E081 | 6929 |
chr5 | 91160604 | 91160668 | E081 | 30039 |
chr5 | 91160887 | 91160972 | E081 | 30322 |
chr5 | 91134830 | 91135621 | E082 | 4265 |
chr5 | 91135667 | 91136055 | E082 | 5102 |
chr5 | 91136194 | 91136284 | E082 | 5629 |
chr5 | 91136390 | 91136500 | E082 | 5825 |
chr5 | 91136502 | 91136876 | E082 | 5937 |
chr5 | 91137079 | 91137129 | E082 | 6514 |