rs10057238

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0057 (1715/29966,GnomAD)
G=0092 (2682/29118,TOPMED)
G=0066 (329/5008,1000G)
chr5:91834748 (GRCh38.p7) (5q14.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.91834748A>G
GRCh37.p13 chr 5NC_000005.9:g.91130565A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.762G=0.238
1000GenomesAmericanSub694A=0.980G=0.020
1000GenomesEast AsianSub1008A=1.000G=0.000
1000GenomesEuropeSub1006A=0.999G=0.001
1000GenomesGlobalStudy-wide5008A=0.934G=0.066
1000GenomesSouth AsianSub978A=1.000G=0.000
The Genome Aggregation DatabaseAfricanSub8722A=0.805G=0.195
The Genome Aggregation DatabaseAmericanSub838A=0.990G=0.010
The Genome Aggregation DatabaseEast AsianSub1600A=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18504A=0.999G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29966A=0.942G=0.057
The Genome Aggregation DatabaseOtherSub302A=1.000G=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.907G=0.092
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs100572380.0003alcohol dependence20201924

eQTL of rs10057238 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10057238 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr59116060491160668E07030039
chr59116088791160972E07030322
chr59116113491161239E07030569
chr59112000491120070E081-10495
chr59112022391120571E081-9994
chr59112061391120741E081-9824
chr59113483091135621E0814265
chr59113566791136055E0815102
chr59113619491136284E0815629
chr59113639091136500E0815825
chr59113650291136876E0815937
chr59113707991137129E0816514
chr59113749491137695E0816929
chr59116060491160668E08130039
chr59116088791160972E08130322
chr59113483091135621E0824265
chr59113566791136055E0825102
chr59113619491136284E0825629
chr59113639091136500E0825825
chr59113650291136876E0825937
chr59113707991137129E0826514