rs10061885

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0149 (4478/29950,GnomAD)
T=0146 (4273/29118,TOPMED)
T=0109 (545/5008,1000G)
T=0176 (677/3854,ALSPAC)
T=0190 (703/3708,TWINSUK)
chr5:124552638 (GRCh38.p7) (5q23.2)
AD
GWASdb2
1   publication(s)
See rs on genome
232 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.124552638C>T
GRCh37.p13 chr 5NC_000005.9:g.123888331C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.859T=0.141
1000GenomesAmericanSub694C=0.890T=0.110
1000GenomesEast AsianSub1008C=0.963T=0.037
1000GenomesEuropeSub1006C=0.842T=0.158
1000GenomesGlobalStudy-wide5008C=0.891T=0.109
1000GenomesSouth AsianSub978C=0.910T=0.090
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.824T=0.176
The Genome Aggregation DatabaseAfricanSub8716C=0.856T=0.144
The Genome Aggregation DatabaseAmericanSub836C=0.900T=0.100
The Genome Aggregation DatabaseEast AsianSub1620C=0.948T=0.052
The Genome Aggregation DatabaseEuropeSub18476C=0.837T=0.163
The Genome Aggregation DatabaseGlobalStudy-wide29950C=0.850T=0.149
The Genome Aggregation DatabaseOtherSub302C=0.830T=0.170
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.853T=0.146
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.810T=0.190
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs100618850.00018alcohol dependence20201924

eQTL of rs10061885 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10061885 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr5123848072123848190E067-40141
chr5123855048123855533E067-32798
chr5123855611123855661E067-32670
chr5123855753123855830E067-32501
chr5123862912123863682E067-24649
chr5123867862123868042E067-20289
chr5123885982123886133E067-2198
chr5123886383123886483E067-1848
chr5123886602123886833E067-1498
chr5123886972123887016E067-1315
chr5123887428123887547E067-784
chr5123887611123887682E067-649
chr5123887736123887880E067-451
chr5123889848123889902E0671517
chr5123890100123890899E0671769
chr5123890947123891192E0672616
chr5123908813123908924E06720482
chr5123909018123909194E06720687
chr5123909962123910017E06721631
chr5123910080123910219E06721749
chr5123910281123910672E06721950
chr5123910869123910944E06722538
chr5123911979123912029E06723648
chr5123912692123912965E06724361
chr5123916553123918018E06728222
chr5123927317123927610E06738986
chr5123928742123928874E06740411
chr5123928932123929091E06740601
chr5123932438123932985E06744107
chr5123934808123935716E06746477
chr5123935757123936039E06747426
chr5123848072123848190E068-40141
chr5123848573123848666E068-39665
chr5123848705123848797E068-39534
chr5123862912123863682E068-24649
chr5123867862123868042E068-20289
chr5123872115123873445E068-14886
chr5123886383123886483E068-1848
chr5123887428123887547E068-784
chr5123890947123891192E0682616
chr5123906102123906265E06817771
chr5123906297123906341E06817966
chr5123906394123906499E06818063
chr5123906503123906621E06818172
chr5123910869123910944E06822538
chr5123911979123912029E06823648
chr5123912692123912965E06824361
chr5123912989123913029E06824658
chr5123916553123918018E06828222
chr5123927317123927610E06838986
chr5123928742123928874E06840411
chr5123928932123929091E06840601
chr5123932438123932985E06844107
chr5123934808123935716E06846477
chr5123847537123847746E069-40585
chr5123848072123848190E069-40141
chr5123848573123848666E069-39665
chr5123848705123848797E069-39534
chr5123885850123885938E069-2393
chr5123885982123886133E069-2198
chr5123886383123886483E069-1848
chr5123886602123886833E069-1498
chr5123886972123887016E069-1315
chr5123887428123887547E069-784
chr5123887611123887682E069-649
chr5123887736123887880E069-451
chr5123890100123890899E0691769
chr5123890947123891192E0692616
chr5123909018123909194E06920687
chr5123909287123909777E06920956
chr5123909962123910017E06921631
chr5123910080123910219E06921749
chr5123910281123910672E06921950
chr5123910869123910944E06922538
chr5123911979123912029E06923648
chr5123912692123912965E06924361
chr5123912989123913029E06924658
chr5123916553123918018E06928222
chr5123927317123927610E06938986
chr5123928742123928874E06940411
chr5123928932123929091E06940601
chr5123932438123932985E06944107
chr5123934808123935716E06946477
chr5123935757123936039E06947426
chr5123848961123849168E070-39163
chr5123850867123851037E070-37294
chr5123851251123851512E070-36819
chr5123851556123852184E070-36147
chr5123885850123885938E070-2393
chr5123885982123886133E070-2198
chr5123886383123886483E070-1848
chr5123886602123886833E070-1498
chr5123886972123887016E070-1315
chr5123890100123890899E0701769
chr5123890947123891192E0702616
chr5123909287123909777E07020956
chr5123909962123910017E07021631
chr5123910080123910219E07021749
chr5123910281123910672E07021950
chr5123910869123910944E07022538
chr5123911979123912029E07023648
chr5123916328123916531E07027997
chr5123916553123918018E07028222
chr5123934808123935716E07046477
chr5123935757123936039E07047426
chr5123847537123847746E071-40585
chr5123850867123851037E071-37294
chr5123851251123851512E071-36819
chr5123867862123868042E071-20289
chr5123885850123885938E071-2393
chr5123885982123886133E071-2198
chr5123886383123886483E071-1848
chr5123886602123886833E071-1498
chr5123886972123887016E071-1315
chr5123887428123887547E071-784
chr5123887611123887682E071-649
chr5123887736123887880E071-451
chr5123906102123906265E07117771
chr5123906297123906341E07117966
chr5123906394123906499E07118063
chr5123906503123906621E07118172
chr5123909287123909777E07120956
chr5123909962123910017E07121631
chr5123910080123910219E07121749
chr5123910281123910672E07121950
chr5123910869123910944E07122538
chr5123911979123912029E07123648
chr5123912692123912965E07124361
chr5123912989123913029E07124658
chr5123916328123916531E07127997
chr5123916553123918018E07128222
chr5123928742123928874E07140411
chr5123928932123929091E07140601
chr5123932438123932985E07144107
chr5123934808123935716E07146477
chr5123935757123936039E07147426
chr5123848072123848190E072-40141
chr5123848573123848666E072-39665
chr5123848705123848797E072-39534
chr5123848961123849168E072-39163
chr5123867862123868042E072-20289
chr5123886602123886833E072-1498
chr5123886972123887016E072-1315
chr5123887428123887547E072-784
chr5123887611123887682E072-649
chr5123887736123887880E072-451
chr5123890947123891192E0722616
chr5123906102123906265E07217771
chr5123906297123906341E07217966
chr5123906394123906499E07218063
chr5123906503123906621E07218172
chr5123908813123908924E07220482
chr5123909018123909194E07220687
chr5123909962123910017E07221631
chr5123910080123910219E07221749
chr5123910281123910672E07221950
chr5123910869123910944E07222538
chr5123911979123912029E07223648
chr5123912692123912965E07224361
chr5123912989123913029E07224658
chr5123916553123918018E07228222
chr5123928742123928874E07240411
chr5123928932123929091E07240601
chr5123932438123932985E07244107
chr5123934808123935716E07246477
chr5123890947123891192E0732616
chr5123909287123909777E07320956
chr5123909962123910017E07321631
chr5123910080123910219E07321749
chr5123916553123918018E07328222
chr5123928742123928874E07340411
chr5123928932123929091E07340601
chr5123932438123932985E07344107
chr5123934808123935716E07346477
chr5123847537123847746E074-40585
chr5123848072123848190E074-40141
chr5123848573123848666E074-39665
chr5123848705123848797E074-39534
chr5123860048123860201E074-28130
chr5123860394123860518E074-27813
chr5123867862123868042E074-20289
chr5123885982123886133E074-2198
chr5123886383123886483E074-1848
chr5123886602123886833E074-1498
chr5123886972123887016E074-1315
chr5123887428123887547E074-784
chr5123887611123887682E074-649
chr5123887736123887880E074-451
chr5123889848123889902E0741517
chr5123890100123890899E0741769
chr5123890947123891192E0742616
chr5123898663123898800E07410332
chr5123906394123906499E07418063
chr5123906503123906621E07418172
chr5123908813123908924E07420482
chr5123909018123909194E07420687
chr5123909287123909777E07420956
chr5123910869123910944E07422538
chr5123911979123912029E07423648
chr5123912692123912965E07424361
chr5123912989123913029E07424658
chr5123916328123916531E07427997
chr5123916553123918018E07428222
chr5123928742123928874E07440411
chr5123928932123929091E07440601
chr5123932438123932985E07444107
chr5123934808123935716E07446477
chr5123935757123936039E07447426
chr5123847537123847746E081-40585
chr5123848072123848190E081-40141
chr5123908813123908924E08120482
chr5123909018123909194E08120687
chr5123909287123909777E08120956
chr5123909962123910017E08121631
chr5123910080123910219E08121749
chr5123910281123910672E08121950
chr5123910869123910944E08122538
chr5123916553123918018E08128222
chr5123918089123918194E08129758
chr5123918319123918502E08129988
chr5123918876123918966E08130545
chr5123934808123935716E08146477
chr5123850867123851037E082-37294
chr5123906297123906341E08217966
chr5123908813123908924E08220482
chr5123909018123909194E08220687
chr5123909962123910017E08221631
chr5123910080123910219E08221749
chr5123910281123910672E08221950
chr5123916553123918018E08228222
chr5123918089123918194E08229758
chr5123918319123918502E08229988