SNP Detail Info-rs10069340

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.107898090G>A
GRCh37.p13 chr 5	NC_000005.9:g.107233791G>A

Molecule type	Change	Amino acid[Codon]	SO Term
FBXL17 transcript	NM_001163315.2:c.	N/A	Intron Variant
FBXL17 transcript variant X1	XM_005272048.4:c.	N/A	Intron Variant
FBXL17 transcript variant X11	XM_005272050.4:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X2	XM_011543574.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X3	XM_011543575.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X4	XM_011543576.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X5	XM_011543577.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X6	XM_011543578.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X8	XM_011543579.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X9	XM_011543580.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X7	XM_017009729.1:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X10	XR_427717.3:n.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.212	A=0.788
1000Genomes	American	Sub	694	G=0.230	A=0.770
1000Genomes	East Asian	Sub	1008	G=0.540	A=0.460
1000Genomes	Europe	Sub	1006	G=0.203	A=0.797
1000Genomes	Global	Study-wide	5008	G=0.286	A=0.714
1000Genomes	South Asian	Sub	978	G=0.240	A=0.760
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.224	A=0.776
The Genome Aggregation Database	African	Sub	8704	G=0.212	A=0.788
The Genome Aggregation Database	American	Sub	838	G=0.230	A=0.770
The Genome Aggregation Database	East Asian	Sub	1592	G=0.511	A=0.489
The Genome Aggregation Database	Europe	Sub	18476	G=0.212	A=0.788
The Genome Aggregation Database	Global	Study-wide	29912	G=0.227	A=0.772
The Genome Aggregation Database	Other	Sub	302	G=0.170	A=0.830
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.222	A=0.777
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.220	A=0.780

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs10069340	0.000976	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr5	107204772	107204940	E068	-28851
chr5	107205056	107205753	E068	-28038
chr5	107272285	107272380	E068	38494
chr5	107272929	107273341	E068	39138
chr5	107273369	107273630	E068	39578
chr5	107253790	107253897	E070	19999
chr5	107272929	107273341	E070	39138
chr5	107273369	107273630	E070	39578
chr5	107273643	107274145	E070	39852
chr5	107208697	107208741	E071	-25050
chr5	107229440	107229663	E071	-4128
chr5	107229746	107229840	E071	-3951
chr5	107229943	107230368	E071	-3423
chr5	107273369	107273630	E074	39578
chr5	107212585	107212760	E081	-21031
chr5	107212874	107212981	E081	-20810
chr5	107251268	107251350	E081	17477
chr5	107252289	107252333	E081	18498
chr5	107253790	107253897	E081	19999
chr5	107271421	107271593	E081	37630
chr5	107272929	107273341	E081	39138
chr5	107273369	107273630	E081	39578
chr5	107200578	107200809	E082	-32982
chr5	107211587	107211865	E082	-21926
chr5	107211904	107212264	E082	-21527
chr5	107212585	107212760	E082	-21031
chr5	107212874	107212981	E082	-20810
chr5	107250496	107250743	E082	16705
chr5	107251268	107251350	E082	17477
chr5	107252289	107252333	E082	18498
chr5	107253790	107253897	E082	19999
chr5	107271421	107271593	E082	37630
chr5	107272929	107273341	E082	39138
chr5	107273369	107273630	E082	39578
chr5	107273643	107274145	E082	39852

rs10069340