rs10118392

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0036 (1104/29992,GnomAD)
C=0049 (1442/29118,TOPMED)
C=0045 (223/5008,1000G)
C=0040 (156/3854,ALSPAC)
C=0041 (151/3708,TWINSUK)
chr9:85065486 (GRCh38.p7) (9q21.33)
CD
GWASdb2
1   publication(s)
See rs on genome
222 Enhancers around
3 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.85065486T>C
GRCh37.p13 chr 9NC_000009.11:g.87680401T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.932C=0.068
1000GenomesAmericanSub694T=0.950C=0.050
1000GenomesEast AsianSub1008T=0.998C=0.002
1000GenomesEuropeSub1006T=0.969C=0.031
1000GenomesGlobalStudy-wide5008T=0.955C=0.045
1000GenomesSouth AsianSub978T=0.930C=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.960C=0.040
The Genome Aggregation DatabaseAfricanSub8732T=0.937C=0.063
The Genome Aggregation DatabaseAmericanSub838T=0.970C=0.030
The Genome Aggregation DatabaseEast AsianSub1618T=1.000C=0.000
The Genome Aggregation DatabaseEuropeSub18502T=0.972C=0.027
The Genome Aggregation DatabaseGlobalStudy-wide29992T=0.963C=0.036
The Genome Aggregation DatabaseOtherSub302T=0.960C=0.040
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.950C=0.049
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.959C=0.041
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs101183920.00000174cocaine dependence(EA)23958962
rs101183920.0000571cocaine dependence(ALL)23958962

eQTL of rs10118392 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10118392 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr98763041187630550E067-49851
chr98763058687630626E067-49775
chr98763111587631289E067-49112
chr98763134587631771E067-48630
chr98763177487632088E067-48313
chr98763334487633398E067-47003
chr98763355487633742E067-46659
chr98763394687634006E067-46395
chr98763732287637372E067-43029
chr98763764087637736E067-42665
chr98763778487637854E067-42547
chr98763787987637929E067-42472
chr98763921087639270E067-41131
chr98763929187639403E067-40998
chr98763943687639546E067-40855
chr98763956187639642E067-40759
chr98764024587640335E067-40066
chr98765302087653354E067-27047
chr98765349587653552E067-26849
chr98765369587653752E067-26649
chr98765389687654043E067-26358
chr98765411187654178E067-26223
chr98765420587654389E067-26012
chr98765449987654623E067-25778
chr98765464487654723E067-25678
chr98765478487654824E067-25577
chr98765642787656597E067-23804
chr98765793587658291E067-22110
chr98765830487658427E067-21974
chr98765844987658595E067-21806
chr98765868587658735E067-21666
chr98763041187630550E068-49851
chr98763058687630626E068-49775
chr98763111587631289E068-49112
chr98763134587631771E068-48630
chr98763177487632088E068-48313
chr98763334487633398E068-47003
chr98763355487633742E068-46659
chr98763732287637372E068-43029
chr98763764087637736E068-42665
chr98763778487637854E068-42547
chr98763921087639270E068-41131
chr98763929187639403E068-40998
chr98763943687639546E068-40855
chr98763956187639642E068-40759
chr98764024587640335E068-40066
chr98764336987643419E068-36982
chr98764371987643769E068-36632
chr98765121687651934E068-28467
chr98765349587653552E068-26849
chr98765369587653752E068-26649
chr98765642787656597E068-23804
chr98765677987656929E068-23472
chr98765735187657475E068-22926
chr98765773087657858E068-22543
chr98765793587658291E068-22110
chr98765830487658427E068-21974
chr98765844987658595E068-21806
chr98765868587658735E068-21666
chr98763041187630550E069-49851
chr98763058687630626E069-49775
chr98763177487632088E069-48313
chr98763334487633398E069-47003
chr98763355487633742E069-46659
chr98763394687634006E069-46395
chr98763420087634350E069-46051
chr98763456287634868E069-45533
chr98763732287637372E069-43029
chr98763764087637736E069-42665
chr98763778487637854E069-42547
chr98763787987637929E069-42472
chr98763921087639270E069-41131
chr98763929187639403E069-40998
chr98763943687639546E069-40855
chr98763956187639642E069-40759
chr98764024587640335E069-40066
chr98765121687651934E069-28467
chr98765302087653354E069-27047
chr98765349587653552E069-26849
chr98765369587653752E069-26649
chr98765389687654043E069-26358
chr98765411187654178E069-26223
chr98765420587654389E069-26012
chr98765449987654623E069-25778
chr98765464487654723E069-25678
chr98765478487654824E069-25577
chr98765642787656597E069-23804
chr98765677987656929E069-23472
chr98765735187657475E069-22926
chr98765773087657858E069-22543
chr98765793587658291E069-22110
chr98765830487658427E069-21974
chr98765844987658595E069-21806
chr98765642787656597E070-23804
chr98765677987656929E070-23472
chr98765735187657475E070-22926
chr98765830487658427E070-21974
chr98765844987658595E070-21806
chr98763041187630550E071-49851
chr98763058687630626E071-49775
chr98763177487632088E071-48313
chr98763334487633398E071-47003
chr98763355487633742E071-46659
chr98763394687634006E071-46395
chr98763420087634350E071-46051
chr98763456287634868E071-45533
chr98763636587636445E071-43956
chr98763646887636560E071-43841
chr98763660187637179E071-43222
chr98763732287637372E071-43029
chr98763764087637736E071-42665
chr98763778487637854E071-42547
chr98763787987637929E071-42472
chr98763921087639270E071-41131
chr98763929187639403E071-40998
chr98763943687639546E071-40855
chr98763956187639642E071-40759
chr98764024587640335E071-40066
chr98765121687651934E071-28467
chr98765302087653354E071-27047
chr98765349587653552E071-26849
chr98765369587653752E071-26649
chr98765389687654043E071-26358
chr98765411187654178E071-26223
chr98765420587654389E071-26012
chr98765449987654623E071-25778
chr98765464487654723E071-25678
chr98765478487654824E071-25577
chr98765642787656597E071-23804
chr98765735187657475E071-22926
chr98765773087657858E071-22543
chr98765793587658291E071-22110
chr98765830487658427E071-21974
chr98763041187630550E072-49851
chr98763058687630626E072-49775
chr98763111587631289E072-49112
chr98763134587631771E072-48630
chr98763177487632088E072-48313
chr98763334487633398E072-47003
chr98763355487633742E072-46659
chr98763636587636445E072-43956
chr98763646887636560E072-43841
chr98763732287637372E072-43029
chr98763764087637736E072-42665
chr98763778487637854E072-42547
chr98763787987637929E072-42472
chr98763921087639270E072-41131
chr98763929187639403E072-40998
chr98763943687639546E072-40855
chr98763956187639642E072-40759
chr98764024587640335E072-40066
chr98764041487640480E072-39921
chr98765677987656929E072-23472
chr98765735187657475E072-22926
chr98765773087657858E072-22543
chr98765793587658291E072-22110
chr98765830487658427E072-21974
chr98763058687630626E073-49775
chr98763111587631289E073-49112
chr98763134587631771E073-48630
chr98763636587636445E073-43956
chr98763646887636560E073-43841
chr98763921087639270E073-41131
chr98763929187639403E073-40998
chr98763943687639546E073-40855
chr98763956187639642E073-40759
chr98764024587640335E073-40066
chr98765302087653354E073-27047
chr98765349587653552E073-26849
chr98765369587653752E073-26649
chr98765389687654043E073-26358
chr98765411187654178E073-26223
chr98765420587654389E073-26012
chr98765449987654623E073-25778
chr98765642787656597E073-23804
chr98765677987656929E073-23472
chr98765735187657475E073-22926
chr98765773087657858E073-22543
chr98765793587658291E073-22110
chr98765830487658427E073-21974
chr98763041187630550E074-49851
chr98763058687630626E074-49775
chr98763111587631289E074-49112
chr98763134587631771E074-48630
chr98763177487632088E074-48313
chr98763334487633398E074-47003
chr98763355487633742E074-46659
chr98763764087637736E074-42665
chr98763778487637854E074-42547
chr98763787987637929E074-42472
chr98763921087639270E074-41131
chr98763929187639403E074-40998
chr98763943687639546E074-40855
chr98763956187639642E074-40759
chr98765302087653354E074-27047
chr98765420587654389E074-26012
chr98765449987654623E074-25778
chr98765464487654723E074-25678
chr98765478487654824E074-25577
chr98765642787656597E074-23804
chr98765677987656929E074-23472
chr98765735187657475E074-22926
chr98765830487658427E074-21974
chr98765844987658595E074-21806
chr98765389687654043E081-26358
chr98765411187654178E081-26223
chr98765420587654389E081-26012
chr98765449987654623E081-25778
chr98765464487654723E081-25678
chr98765478487654824E081-25577
chr98765550187656284E081-24117
chr98765642787656597E081-23804
chr98765677987656929E081-23472
chr98772314087723190E08142739
chr98772328087723369E08142879
chr98772568987725800E08145288
chr98765389687654043E082-26358
chr98765411187654178E082-26223
chr98765420587654389E082-26012
chr98765449987654623E082-25778
chr98765464487654723E082-25678
chr98765478487654824E082-25577










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr98764509087645140E074-35261
chr98764520887645300E074-35101
chr98764531287645576E074-34825