SNP Detail Info-rs10121807

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

LOC107987087 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0138 (4158/29932,GnomAD)
G=0162 (4730/29118,TOPMED)
G=0122 (609/5008,1000G)
G=0094 (361/3854,ALSPAC)
G=0093 (344/3708,TWINSUK)

Position: chr9:82521969 (GRCh38.p7) (9q21.32)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.82521969A>G
GRCh37.p13 chr 9	NC_000009.11:g.85136884A>G

Molecule type	Change	Amino acid[Codon]	SO Term
LOC107987087 transcript	XR_001746782.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.700	G=0.300
1000Genomes	American	Sub	694	A=0.920	G=0.080
1000Genomes	East Asian	Sub	1008	A=0.941	G=0.059
1000Genomes	Europe	Sub	1006	A=0.929	G=0.071
1000Genomes	Global	Study-wide	5008	A=0.878	G=0.122
1000Genomes	South Asian	Sub	978	A=0.970	G=0.030
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.906	G=0.094
The Genome Aggregation Database	African	Sub	8716	A=0.725	G=0.275
The Genome Aggregation Database	American	Sub	838	A=0.940	G=0.060
The Genome Aggregation Database	East Asian	Sub	1584	A=0.940	G=0.060
The Genome Aggregation Database	Europe	Sub	18492	A=0.914	G=0.085
The Genome Aggregation Database	Global	Study-wide	29932	A=0.861	G=0.138
The Genome Aggregation Database	Other	Sub	302	A=0.920	G=0.080
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.837	G=0.162
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.907	G=0.093

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs10121807	9.38E-05	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	85102626	85105640	E067	-31244
chr9	85102626	85105640	E068	-31244
chr9	85102626	85105640	E070	-31244
chr9	85102626	85105640	E071	-31244

rs10121807