rs10125984

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0012 (361/29900,GnomAD)
T=0019 (557/29118,TOPMED)
T=0014 (70/5008,1000G)
chr9:7786701 (GRCh38.p7) (9p24.1)
AD
GWASdb2
1   publication(s)
See rs on genome
29 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.7786701C>T
GRCh37.p13 chr 9NC_000009.11:g.7786701C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.951T=0.049
1000GenomesAmericanSub694C=0.990T=0.010
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=1.000T=0.000
1000GenomesGlobalStudy-wide5008C=0.986T=0.014
1000GenomesSouth AsianSub978C=1.000T=0.000
The Genome Aggregation DatabaseAfricanSub8692C=0.959T=0.041
The Genome Aggregation DatabaseAmericanSub838C=1.000T=0.000
The Genome Aggregation DatabaseEast AsianSub1622C=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18446C=0.999T=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29900C=0.987T=0.012
The Genome Aggregation DatabaseOtherSub302C=1.000T=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.980T=0.019
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs101259840.000682alcohol dependence21314694

eQTL of rs10125984 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10125984 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr977889617789011E0672260
chr977889617789011E0692260
chr977897067789788E0693005
chr977705087770595E070-16106
chr977772797777329E070-9372
chr977773927777508E070-9193
chr977778447778170E070-8531
chr977913667791798E0704665
chr977918127791912E0705111
chr977881477788187E0711446
chr977889617789011E0712260
chr977980137798075E07111312
chr977981407798200E07111439
chr977907827790853E0734081
chr977889617789011E0742260
chr977817207781909E081-4792
chr977836887784253E081-2448
chr977843957784458E081-2243
chr977844937784544E081-2157
chr977845857784709E081-1992
chr977852837785345E081-1356
chr978342887834351E08147587
chr978343617834488E08147660
chr978345887834666E08147887
chr977832507783414E082-3287
chr977834267783544E082-3157
chr977836887784253E082-2448
chr977843957784458E082-2243
chr977974487797519E08210747








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr977989177800268E06712216
chr977989177800268E06812216
chr977989177800268E06912216
chr977989177800268E07012216
chr977989177800268E07112216
chr977989177800268E07212216
chr977989177800268E07312216
chr977989177800268E07412216
chr977989177800268E08112216
chr977989177800268E08212216