rs10135962

Homo sapiens
C>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0300 (8962/29860,GnomAD)
G=0399 (11636/29118,TOPMED)
G=0312 (1560/5008,1000G)
G=0135 (521/3854,ALSPAC)
G=0150 (558/3708,TWINSUK)
chr14:57198989 (GRCh38.p7) (14q22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.57198989C>G
GRCh37.p13 chr 14NC_000014.8:g.57665707C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.152G=0.848
1000GenomesAmericanSub694C=0.870G=0.130
1000GenomesEast AsianSub1008C=0.886G=0.114
1000GenomesEuropeSub1006C=0.882G=0.118
1000GenomesGlobalStudy-wide5008C=0.688G=0.312
1000GenomesSouth AsianSub978C=0.880G=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.865G=0.135
The Genome Aggregation DatabaseAfricanSub8680C=0.278G=0.722
The Genome Aggregation DatabaseAmericanSub834C=0.890G=0.110
The Genome Aggregation DatabaseEast AsianSub1620C=0.856G=0.144
The Genome Aggregation DatabaseEuropeSub18424C=0.873G=0.126
The Genome Aggregation DatabaseGlobalStudy-wide29860C=0.699G=0.300
The Genome Aggregation DatabaseOtherSub302C=0.850G=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.600G=0.399
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.850G=0.150
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs101359628.16E-05alcohol consumption23743675

eQTL of rs10135962 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10135962 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr145764085457640986E081-24721
chr145764112257641684E081-24023
chr145764209457642148E081-23559
chr145764228557642434E081-23273