SNP Detail Info-rs10135962

Organism: Homo sapiens

Alleles: C>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0300 (8962/29860,GnomAD)
G=0399 (11636/29118,TOPMED)
G=0312 (1560/5008,1000G)
G=0135 (521/3854,ALSPAC)
G=0150 (558/3708,TWINSUK)

Position: chr14:57198989 (GRCh38.p7) (14q22.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 14	NC_000014.9:g.57198989C>G
GRCh37.p13 chr 14	NC_000014.8:g.57665707C>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.152	G=0.848
1000Genomes	American	Sub	694	C=0.870	G=0.130
1000Genomes	East Asian	Sub	1008	C=0.886	G=0.114
1000Genomes	Europe	Sub	1006	C=0.882	G=0.118
1000Genomes	Global	Study-wide	5008	C=0.688	G=0.312
1000Genomes	South Asian	Sub	978	C=0.880	G=0.120
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.865	G=0.135
The Genome Aggregation Database	African	Sub	8680	C=0.278	G=0.722
The Genome Aggregation Database	American	Sub	834	C=0.890	G=0.110
The Genome Aggregation Database	East Asian	Sub	1620	C=0.856	G=0.144
The Genome Aggregation Database	Europe	Sub	18424	C=0.873	G=0.126
The Genome Aggregation Database	Global	Study-wide	29860	C=0.699	G=0.300
The Genome Aggregation Database	Other	Sub	302	C=0.850	G=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.600	G=0.399
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.850	G=0.150

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr14	57640854	57640986	E081	-24721
chr14	57641122	57641684	E081	-24023
chr14	57642094	57642148	E081	-23559
chr14	57642285	57642434	E081	-23273

rs10135962