rs10141191

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0196 (5885/29962,GnomAD)
A=0202 (5886/29118,TOPMED)
A=0119 (598/5008,1000G)
A=0256 (987/3854,ALSPAC)
A=0261 (967/3708,TWINSUK)
chr14:98421173 (GRCh38.p7) (14q32.2)
AD
GWASdb2
1   publication(s)
See rs on genome
17 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.98421173G>A
GRCh37.p13 chr 14NC_000014.8:g.98887510G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.875A=0.125
1000GenomesAmericanSub694G=0.870A=0.130
1000GenomesEast AsianSub1008G=0.996A=0.004
1000GenomesEuropeSub1006G=0.767A=0.233
1000GenomesGlobalStudy-wide5008G=0.881A=0.119
1000GenomesSouth AsianSub978G=0.890A=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.744A=0.256
The Genome Aggregation DatabaseAfricanSub8724G=0.850A=0.150
The Genome Aggregation DatabaseAmericanSub838G=0.870A=0.130
The Genome Aggregation DatabaseEast AsianSub1620G=0.996A=0.004
The Genome Aggregation DatabaseEuropeSub18478G=0.760A=0.239
The Genome Aggregation DatabaseGlobalStudy-wide29962G=0.803A=0.196
The Genome Aggregation DatabaseOtherSub302G=0.850A=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.797A=0.202
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.739A=0.261
PMID Title Author Journal
22072270Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.Wang KSJ Neural Transm (Vienna)

P-Value

SNP ID p-value Traits Study
rs101411911.78E-05alcohol withdrawal symptoms22072270

eQTL of rs10141191 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10141191 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr149887449998874599E068-12911
chr149887466698874727E068-12783
chr149884052098840879E070-46631
chr149884088298841017E070-46493
chr149887132498871714E070-15796
chr149887176298871822E070-15688
chr149893293698933033E07045426
chr149893318498933523E07045674
chr149893355498933779E07046044
chr149887388998873939E071-13571
chr149887449998874599E071-12911
chr149887466698874727E071-12783
chr149887449998874599E074-12911
chr149887466698874727E074-12783
chr149884052098840879E081-46631
chr149884088298841017E081-46493
chr149884088298841017E082-46493