SNP Detail Info-rs10158567

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.241125210G>A
GRCh37.p13 chr 1	NC_000001.10:g.241288510G>A

Molecule type	Change	Amino acid[Codon]	SO Term
RGS7 transcript variant 2	NM_001282773.1:c.	N/A	Intron Variant
RGS7 transcript variant 3	NM_001282775.1:c.	N/A	Intron Variant
RGS7 transcript variant 4	NM_001282778.1:c.	N/A	Intron Variant
RGS7 transcript variant 1	NM_002924.5:c.	N/A	Intron Variant
RGS7 transcript variant X1	XM_005273218.3:c.	N/A	Intron Variant
RGS7 transcript variant X5	XM_011544246.2:c.	N/A	Intron Variant
RGS7 transcript variant X2	XM_017002001.1:c.	N/A	Intron Variant
RGS7 transcript variant X3	XM_017002002.1:c.	N/A	Intron Variant
RGS7 transcript variant X7	XM_017002003.1:c.	N/A	Intron Variant
RGS7 transcript variant X8	XM_017002004.1:c.	N/A	Intron Variant
RGS7 transcript variant X9	XM_017002005.1:c.	N/A	Intron Variant
RGS7 transcript variant X10	XM_017002006.1:c.	N/A	Intron Variant
RGS7 transcript variant X11	XM_017002007.1:c.	N/A	Intron Variant
RGS7 transcript variant X12	XM_017002008.1:c.	N/A	Intron Variant
RGS7 transcript variant X14	XM_017002010.1:c.	N/A	Intron Variant
RGS7 transcript variant X4	XM_006711800.3:c.	N/A	Genic Upstream Transcript Variant
RGS7 transcript variant X6	XM_011544247.2:c.	N/A	Genic Upstream Transcript Variant
RGS7 transcript variant X10	XM_017002009.1:c.	N/A	Genic Upstream Transcript Variant
RGS7 transcript variant X15	XM_017002011.1:c.	N/A	Genic Upstream Transcript Variant
RGS7 transcript variant X16	XM_017002012.1:c.	N/A	Genic Upstream Transcript Variant
RGS7 transcript variant X13	XM_017002013.1:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.143	A=0.857
1000Genomes	American	Sub	694	G=0.680	A=0.320
1000Genomes	East Asian	Sub	1008	G=0.622	A=0.378
1000Genomes	Europe	Sub	1006	G=0.745	A=0.255
1000Genomes	Global	Study-wide	5008	G=0.552	A=0.448
1000Genomes	South Asian	Sub	978	G=0.740	A=0.260
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.740	A=0.260
The Genome Aggregation Database	African	Sub	8698	G=0.217	A=0.783
The Genome Aggregation Database	American	Sub	836	G=0.730	A=0.270
The Genome Aggregation Database	East Asian	Sub	1610	G=0.586	A=0.414
The Genome Aggregation Database	Europe	Sub	18438	G=0.769	A=0.230
The Genome Aggregation Database	Global	Study-wide	29882	G=0.597	A=0.402
The Genome Aggregation Database	Other	Sub	300	G=0.750	A=0.250
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.509	A=0.491
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.742	A=0.258

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs10158567	0.000716	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	241242355	241242698	E073	-45812
chr1	241307188	241307332	E081	18678
chr1	241321839	241321911	E082	33329

rs10158567