rs10161716

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0133 (3993/29946,GnomAD)
T=0165 (4832/29118,TOPMED)
T=0125 (628/5008,1000G)
T=0105 (403/3854,ALSPAC)
T=0104 (386/3708,TWINSUK)
chr13:87080135 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
6 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87080135C>T
GRCh37.p13 chr 13NC_000013.10:g.87732390C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.753T=0.247
1000GenomesAmericanSub694C=0.910T=0.090
1000GenomesEast AsianSub1008C=0.969T=0.031
1000GenomesEuropeSub1006C=0.906T=0.094
1000GenomesGlobalStudy-wide5008C=0.875T=0.125
1000GenomesSouth AsianSub978C=0.880T=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.895T=0.105
The Genome Aggregation DatabaseAfricanSub8712C=0.746T=0.254
The Genome Aggregation DatabaseAmericanSub836C=0.920T=0.080
The Genome Aggregation DatabaseEast AsianSub1622C=0.954T=0.046
The Genome Aggregation DatabaseEuropeSub18474C=0.913T=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29946C=0.866T=0.133
The Genome Aggregation DatabaseOtherSub302C=0.840T=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.834T=0.165
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.896T=0.104
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs101617160.000102alcohol consumption23743675

eQTL of rs10161716 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10161716 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138778075187780970E07048361
chr138778099087781070E07048600
chr138778113987781194E07048749
chr138778136187781523E07048971
chr138778160987781698E07049219
chr138778189787782225E07049507