rs10162898

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0359 (10726/29862,GnomAD)
A=0379 (11040/29118,TOPMED)
A=0376 (1883/5008,1000G)
A=0287 (1105/3854,ALSPAC)
A=0287 (1066/3708,TWINSUK)
chr15:70198164 (GRCh38.p7) (15q23)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.70198164G>A
GRCh37.p13 chr 15NC_000015.9:g.70490503G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.508A=0.492
1000GenomesAmericanSub694G=0.640A=0.360
1000GenomesEast AsianSub1008G=0.629A=0.371
1000GenomesEuropeSub1006G=0.682A=0.318
1000GenomesGlobalStudy-wide5008G=0.624A=0.376
1000GenomesSouth AsianSub978G=0.710A=0.290
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.713A=0.287
The Genome Aggregation DatabaseAfricanSub8684G=0.535A=0.465
The Genome Aggregation DatabaseAmericanSub836G=0.630A=0.370
The Genome Aggregation DatabaseEast AsianSub1616G=0.603A=0.397
The Genome Aggregation DatabaseEuropeSub18424G=0.693A=0.306
The Genome Aggregation DatabaseGlobalStudy-wide29862G=0.640A=0.359
The Genome Aggregation DatabaseOtherSub302G=0.710A=0.290
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.620A=0.379
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.713A=0.287
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs101628980.000663alcohol dependence20201924

eQTL of rs10162898 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10162898 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr157048742670489875E067-628
chr157044859070448739E068-41764
chr157045317170453511E068-36992
chr157045354470453747E068-36756
chr157045379970453884E068-36619
chr157045720870458983E068-31520
chr157044859070448739E069-41764
chr157044890670449697E069-40806
chr157044071970440779E070-49724
chr157044083370441222E070-49281
chr157044129870441374E070-49129
chr157044614270446364E070-44139
chr157044640970447739E070-42764
chr157044782870447875E070-42628
chr157044793570447979E070-42524
chr157044802270448107E070-42396
chr157044841370448538E070-41965
chr157044859070448739E070-41764
chr157044890670449697E070-40806
chr157045720870458983E070-31520
chr157047321270474223E070-16280
chr157048220170482415E070-8088
chr157048248870482810E070-7693
chr157048288970482996E070-7507
chr157048329370483702E070-6801
chr157048742670489875E070-628
chr157048991370491066E0700
chr157049115970491213E070656
chr157049122270491568E070719
chr157049157770491679E0701074
chr157049176270492539E0701259
chr157049257170493823E0702068
chr157049383370493988E0703330
chr157049411570494198E0703612
chr157049452570494579E0704022
chr157049474270494816E0704239
chr157049497170495139E0704468
chr157049516070495210E0704657
chr157049523070495352E0704727
chr157049578170495884E0705278
chr157050501670505091E07014513
chr157050518070505562E07014677
chr157050579170505841E07015288
chr157050887170508921E07018368
chr157050940470509594E07018901
chr157051114670511266E07020643
chr157051131570511444E07020812
chr157051159470511913E07021091
chr157051204270512126E07021539
chr157051230670512385E07021803
chr157051240470512464E07021901
chr157051311070513418E07022607
chr157051773670518033E07027233
chr157051871070518890E07028207
chr157051892770518977E07028424
chr157051905970519124E07028556
chr157051913270519182E07028629
chr157045354470453747E071-36756
chr157045379970453884E071-36619
chr157045394170454074E071-36429
chr157048742670489875E071-628
chr157048742670489875E072-628
chr157045317170453511E073-36992
chr157045354470453747E073-36756
chr157048742670489875E073-628
chr157048742670489875E074-628
chr157044071970440779E081-49724
chr157044083370441222E081-49281
chr157044129870441374E081-49129
chr157044614270446364E081-44139
chr157044640970447739E081-42764
chr157044782870447875E081-42628
chr157044793570447979E081-42524
chr157044802270448107E081-42396
chr157044841370448538E081-41965
chr157044859070448739E081-41764
chr157044890670449697E081-40806
chr157044978070449945E081-40558
chr157045010170450174E081-40329
chr157045024470450342E081-40161
chr157045039470450478E081-40025
chr157045061570450676E081-39827
chr157045073270450808E081-39695
chr157045081170450920E081-39583
chr157045317170453511E081-36992
chr157045354470453747E081-36756
chr157045379970453884E081-36619
chr157045720870458983E081-31520
chr157047278670472860E081-17643
chr157047289170473002E081-17501
chr157047300670473111E081-17392
chr157047321270474223E081-16280
chr157048742670489875E081-628
chr157048991370491066E0810
chr157049115970491213E081656
chr157049122270491568E081719
chr157049157770491679E0811074
chr157049176270492539E0811259
chr157049257170493823E0812068
chr157049383370493988E0813330
chr157049411570494198E0813612
chr157049452570494579E0814022
chr157049474270494816E0814239
chr157049497170495139E0814468
chr157049516070495210E0814657
chr157049523070495352E0814727
chr157049821870498274E0817715
chr157049873170498803E0818228
chr157049885970498933E0818356
chr157049915270499313E0818649
chr157050501670505091E08114513
chr157050518070505562E08114677
chr157044640970447739E082-42764
chr157044782870447875E082-42628
chr157044793570447979E082-42524
chr157044802270448107E082-42396
chr157044841370448538E082-41965
chr157044859070448739E082-41764
chr157044890670449697E082-40806
chr157044978070449945E082-40558
chr157045010170450174E082-40329
chr157045024470450342E082-40161
chr157045039470450478E082-40025
chr157045061570450676E082-39827
chr157045073270450808E082-39695
chr157045720870458983E082-31520
chr157047321270474223E082-16280
chr157048288970482996E082-7507
chr157048329370483702E082-6801
chr157049115970491213E082656
chr157049122270491568E082719
chr157049157770491679E0821074
chr157049176270492539E0821259
chr157049411570494198E0823612
chr157049452570494579E0824022
chr157049474270494816E0824239
chr157049497170495139E0824468
chr157049516070495210E0824657
chr157050579170505841E08215288
chr157051131570511444E08220812
chr157051159470511913E08221091