| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 15 | NC_000015.10:g.70198164G>A |
| GRCh37.p13 chr 15 | NC_000015.9:g.70490503G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.508 | A=0.492 |
| 1000Genomes | American | Sub | 694 | G=0.640 | A=0.360 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.629 | A=0.371 |
| 1000Genomes | Europe | Sub | 1006 | G=0.682 | A=0.318 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.624 | A=0.376 |
| 1000Genomes | South Asian | Sub | 978 | G=0.710 | A=0.290 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.713 | A=0.287 |
| The Genome Aggregation Database | African | Sub | 8684 | G=0.535 | A=0.465 |
| The Genome Aggregation Database | American | Sub | 836 | G=0.630 | A=0.370 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.603 | A=0.397 |
| The Genome Aggregation Database | Europe | Sub | 18424 | G=0.693 | A=0.306 |
| The Genome Aggregation Database | Global | Study-wide | 29862 | G=0.640 | A=0.359 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.710 | A=0.290 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.620 | A=0.379 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.713 | A=0.287 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs10162898 | 0.000663 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr15 | 70487426 | 70489875 | E067 | -628 |
| chr15 | 70448590 | 70448739 | E068 | -41764 |
| chr15 | 70453171 | 70453511 | E068 | -36992 |
| chr15 | 70453544 | 70453747 | E068 | -36756 |
| chr15 | 70453799 | 70453884 | E068 | -36619 |
| chr15 | 70457208 | 70458983 | E068 | -31520 |
| chr15 | 70448590 | 70448739 | E069 | -41764 |
| chr15 | 70448906 | 70449697 | E069 | -40806 |
| chr15 | 70440719 | 70440779 | E070 | -49724 |
| chr15 | 70440833 | 70441222 | E070 | -49281 |
| chr15 | 70441298 | 70441374 | E070 | -49129 |
| chr15 | 70446142 | 70446364 | E070 | -44139 |
| chr15 | 70446409 | 70447739 | E070 | -42764 |
| chr15 | 70447828 | 70447875 | E070 | -42628 |
| chr15 | 70447935 | 70447979 | E070 | -42524 |
| chr15 | 70448022 | 70448107 | E070 | -42396 |
| chr15 | 70448413 | 70448538 | E070 | -41965 |
| chr15 | 70448590 | 70448739 | E070 | -41764 |
| chr15 | 70448906 | 70449697 | E070 | -40806 |
| chr15 | 70457208 | 70458983 | E070 | -31520 |
| chr15 | 70473212 | 70474223 | E070 | -16280 |
| chr15 | 70482201 | 70482415 | E070 | -8088 |
| chr15 | 70482488 | 70482810 | E070 | -7693 |
| chr15 | 70482889 | 70482996 | E070 | -7507 |
| chr15 | 70483293 | 70483702 | E070 | -6801 |
| chr15 | 70487426 | 70489875 | E070 | -628 |
| chr15 | 70489913 | 70491066 | E070 | 0 |
| chr15 | 70491159 | 70491213 | E070 | 656 |
| chr15 | 70491222 | 70491568 | E070 | 719 |
| chr15 | 70491577 | 70491679 | E070 | 1074 |
| chr15 | 70491762 | 70492539 | E070 | 1259 |
| chr15 | 70492571 | 70493823 | E070 | 2068 |
| chr15 | 70493833 | 70493988 | E070 | 3330 |
| chr15 | 70494115 | 70494198 | E070 | 3612 |
| chr15 | 70494525 | 70494579 | E070 | 4022 |
| chr15 | 70494742 | 70494816 | E070 | 4239 |
| chr15 | 70494971 | 70495139 | E070 | 4468 |
| chr15 | 70495160 | 70495210 | E070 | 4657 |
| chr15 | 70495230 | 70495352 | E070 | 4727 |
| chr15 | 70495781 | 70495884 | E070 | 5278 |
| chr15 | 70505016 | 70505091 | E070 | 14513 |
| chr15 | 70505180 | 70505562 | E070 | 14677 |
| chr15 | 70505791 | 70505841 | E070 | 15288 |
| chr15 | 70508871 | 70508921 | E070 | 18368 |
| chr15 | 70509404 | 70509594 | E070 | 18901 |
| chr15 | 70511146 | 70511266 | E070 | 20643 |
| chr15 | 70511315 | 70511444 | E070 | 20812 |
| chr15 | 70511594 | 70511913 | E070 | 21091 |
| chr15 | 70512042 | 70512126 | E070 | 21539 |
| chr15 | 70512306 | 70512385 | E070 | 21803 |
| chr15 | 70512404 | 70512464 | E070 | 21901 |
| chr15 | 70513110 | 70513418 | E070 | 22607 |
| chr15 | 70517736 | 70518033 | E070 | 27233 |
| chr15 | 70518710 | 70518890 | E070 | 28207 |
| chr15 | 70518927 | 70518977 | E070 | 28424 |
| chr15 | 70519059 | 70519124 | E070 | 28556 |
| chr15 | 70519132 | 70519182 | E070 | 28629 |
| chr15 | 70453544 | 70453747 | E071 | -36756 |
| chr15 | 70453799 | 70453884 | E071 | -36619 |
| chr15 | 70453941 | 70454074 | E071 | -36429 |
| chr15 | 70487426 | 70489875 | E071 | -628 |
| chr15 | 70487426 | 70489875 | E072 | -628 |
| chr15 | 70453171 | 70453511 | E073 | -36992 |
| chr15 | 70453544 | 70453747 | E073 | -36756 |
| chr15 | 70487426 | 70489875 | E073 | -628 |
| chr15 | 70487426 | 70489875 | E074 | -628 |
| chr15 | 70440719 | 70440779 | E081 | -49724 |
| chr15 | 70440833 | 70441222 | E081 | -49281 |
| chr15 | 70441298 | 70441374 | E081 | -49129 |
| chr15 | 70446142 | 70446364 | E081 | -44139 |
| chr15 | 70446409 | 70447739 | E081 | -42764 |
| chr15 | 70447828 | 70447875 | E081 | -42628 |
| chr15 | 70447935 | 70447979 | E081 | -42524 |
| chr15 | 70448022 | 70448107 | E081 | -42396 |
| chr15 | 70448413 | 70448538 | E081 | -41965 |
| chr15 | 70448590 | 70448739 | E081 | -41764 |
| chr15 | 70448906 | 70449697 | E081 | -40806 |
| chr15 | 70449780 | 70449945 | E081 | -40558 |
| chr15 | 70450101 | 70450174 | E081 | -40329 |
| chr15 | 70450244 | 70450342 | E081 | -40161 |
| chr15 | 70450394 | 70450478 | E081 | -40025 |
| chr15 | 70450615 | 70450676 | E081 | -39827 |
| chr15 | 70450732 | 70450808 | E081 | -39695 |
| chr15 | 70450811 | 70450920 | E081 | -39583 |
| chr15 | 70453171 | 70453511 | E081 | -36992 |
| chr15 | 70453544 | 70453747 | E081 | -36756 |
| chr15 | 70453799 | 70453884 | E081 | -36619 |
| chr15 | 70457208 | 70458983 | E081 | -31520 |
| chr15 | 70472786 | 70472860 | E081 | -17643 |
| chr15 | 70472891 | 70473002 | E081 | -17501 |
| chr15 | 70473006 | 70473111 | E081 | -17392 |
| chr15 | 70473212 | 70474223 | E081 | -16280 |
| chr15 | 70487426 | 70489875 | E081 | -628 |
| chr15 | 70489913 | 70491066 | E081 | 0 |
| chr15 | 70491159 | 70491213 | E081 | 656 |
| chr15 | 70491222 | 70491568 | E081 | 719 |
| chr15 | 70491577 | 70491679 | E081 | 1074 |
| chr15 | 70491762 | 70492539 | E081 | 1259 |
| chr15 | 70492571 | 70493823 | E081 | 2068 |
| chr15 | 70493833 | 70493988 | E081 | 3330 |
| chr15 | 70494115 | 70494198 | E081 | 3612 |
| chr15 | 70494525 | 70494579 | E081 | 4022 |
| chr15 | 70494742 | 70494816 | E081 | 4239 |
| chr15 | 70494971 | 70495139 | E081 | 4468 |
| chr15 | 70495160 | 70495210 | E081 | 4657 |
| chr15 | 70495230 | 70495352 | E081 | 4727 |
| chr15 | 70498218 | 70498274 | E081 | 7715 |
| chr15 | 70498731 | 70498803 | E081 | 8228 |
| chr15 | 70498859 | 70498933 | E081 | 8356 |
| chr15 | 70499152 | 70499313 | E081 | 8649 |
| chr15 | 70505016 | 70505091 | E081 | 14513 |
| chr15 | 70505180 | 70505562 | E081 | 14677 |
| chr15 | 70446409 | 70447739 | E082 | -42764 |
| chr15 | 70447828 | 70447875 | E082 | -42628 |
| chr15 | 70447935 | 70447979 | E082 | -42524 |
| chr15 | 70448022 | 70448107 | E082 | -42396 |
| chr15 | 70448413 | 70448538 | E082 | -41965 |
| chr15 | 70448590 | 70448739 | E082 | -41764 |
| chr15 | 70448906 | 70449697 | E082 | -40806 |
| chr15 | 70449780 | 70449945 | E082 | -40558 |
| chr15 | 70450101 | 70450174 | E082 | -40329 |
| chr15 | 70450244 | 70450342 | E082 | -40161 |
| chr15 | 70450394 | 70450478 | E082 | -40025 |
| chr15 | 70450615 | 70450676 | E082 | -39827 |
| chr15 | 70450732 | 70450808 | E082 | -39695 |
| chr15 | 70457208 | 70458983 | E082 | -31520 |
| chr15 | 70473212 | 70474223 | E082 | -16280 |
| chr15 | 70482889 | 70482996 | E082 | -7507 |
| chr15 | 70483293 | 70483702 | E082 | -6801 |
| chr15 | 70491159 | 70491213 | E082 | 656 |
| chr15 | 70491222 | 70491568 | E082 | 719 |
| chr15 | 70491577 | 70491679 | E082 | 1074 |
| chr15 | 70491762 | 70492539 | E082 | 1259 |
| chr15 | 70494115 | 70494198 | E082 | 3612 |
| chr15 | 70494525 | 70494579 | E082 | 4022 |
| chr15 | 70494742 | 70494816 | E082 | 4239 |
| chr15 | 70494971 | 70495139 | E082 | 4468 |
| chr15 | 70495160 | 70495210 | E082 | 4657 |
| chr15 | 70505791 | 70505841 | E082 | 15288 |
| chr15 | 70511315 | 70511444 | E082 | 20812 |
| chr15 | 70511594 | 70511913 | E082 | 21091 |