Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 2 | NC_000002.12:g.80039771A>G |
GRCh37.p13 chr 2 | NC_000002.11:g.80266897A>G |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
CTNNA2 transcript variant 2 | NM_001164883.1:c. | N/A | Intron Variant |
CTNNA2 transcript variant 3 | NM_001282597.2:c. | N/A | Intron Variant |
CTNNA2 transcript variant 4 | NM_001282598.1:c. | N/A | Intron Variant |
CTNNA2 transcript variant 1 | NM_004389.3:c. | N/A | Intron Variant |
CTNNA2 transcript variant 5 | NM_001282599.1:c. | N/A | Genic Upstream Transcript Variant |
CTNNA2 transcript variant 6 | NM_001282600.1:c. | N/A | Genic Upstream Transcript Variant |
CTNNA2 transcript variant 7 | NM_001320810.1:c. | N/A | Genic Upstream Transcript Variant |
CTNNA2 transcript variant X4 | XM_011532555.2:c. | N/A | Intron Variant |
CTNNA2 transcript variant X2 | XM_011532556.2:c. | N/A | Intron Variant |
CTNNA2 transcript variant X3 | XM_017003403.1:c. | N/A | Intron Variant |
CTNNA2 transcript variant X4 | XM_017003404.1:c. | N/A | Intron Variant |
CTNNA2 transcript variant X5 | XM_017003405.1:c. | N/A | Intron Variant |
CTNNA2 transcript variant X9 | XM_011532557.2:c. | N/A | Genic Upstream Transcript Variant |
CTNNA2 transcript variant X7 | XM_017003406.1:c. | N/A | Genic Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.882 | G=0.118 |
1000Genomes | American | Sub | 694 | A=0.840 | G=0.160 |
1000Genomes | East Asian | Sub | 1008 | A=0.902 | G=0.098 |
1000Genomes | Europe | Sub | 1006 | A=0.718 | G=0.282 |
1000Genomes | Global | Study-wide | 5008 | A=0.845 | G=0.155 |
1000Genomes | South Asian | Sub | 978 | A=0.870 | G=0.130 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.728 | G=0.272 |
The Genome Aggregation Database | African | Sub | 8712 | A=0.872 | G=0.128 |
The Genome Aggregation Database | American | Sub | 836 | A=0.840 | G=0.160 |
The Genome Aggregation Database | East Asian | Sub | 1620 | A=0.919 | G=0.081 |
The Genome Aggregation Database | Europe | Sub | 18490 | A=0.713 | G=0.287 |
The Genome Aggregation Database | Global | Study-wide | 29960 | A=0.774 | G=0.225 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.790 | G=0.210 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | A=0.810 | G=0.189 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.735 | G=0.265 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs10170918 | 0.000993 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr2 | 80241731 | 80241829 | E067 | -25068 |
chr2 | 80241868 | 80242116 | E067 | -24781 |
chr2 | 80277275 | 80277388 | E067 | 10378 |
chr2 | 80277406 | 80277679 | E067 | 10509 |
chr2 | 80289143 | 80289292 | E067 | 22246 |
chr2 | 80300269 | 80300621 | E067 | 33372 |
chr2 | 80253572 | 80253730 | E068 | -13167 |
chr2 | 80285841 | 80285959 | E068 | 18944 |
chr2 | 80286617 | 80286690 | E068 | 19720 |
chr2 | 80286695 | 80286771 | E068 | 19798 |
chr2 | 80286853 | 80286944 | E068 | 19956 |
chr2 | 80289143 | 80289292 | E068 | 22246 |
chr2 | 80299966 | 80300094 | E068 | 33069 |
chr2 | 80300269 | 80300621 | E068 | 33372 |
chr2 | 80235325 | 80235496 | E069 | -31401 |
chr2 | 80235857 | 80236028 | E069 | -30869 |
chr2 | 80289143 | 80289292 | E069 | 22246 |
chr2 | 80300269 | 80300621 | E069 | 33372 |
chr2 | 80289143 | 80289292 | E070 | 22246 |
chr2 | 80241868 | 80242116 | E071 | -24781 |
chr2 | 80243359 | 80243646 | E071 | -23251 |
chr2 | 80277275 | 80277388 | E071 | 10378 |
chr2 | 80277406 | 80277679 | E071 | 10509 |
chr2 | 80286853 | 80286944 | E071 | 19956 |
chr2 | 80289143 | 80289292 | E071 | 22246 |
chr2 | 80299966 | 80300094 | E071 | 33069 |
chr2 | 80300269 | 80300621 | E071 | 33372 |
chr2 | 80253572 | 80253730 | E072 | -13167 |
chr2 | 80277275 | 80277388 | E072 | 10378 |
chr2 | 80277406 | 80277679 | E072 | 10509 |
chr2 | 80289143 | 80289292 | E072 | 22246 |
chr2 | 80220201 | 80220530 | E073 | -46367 |
chr2 | 80289143 | 80289292 | E073 | 22246 |
chr2 | 80298893 | 80299580 | E073 | 31996 |
chr2 | 80299966 | 80300094 | E073 | 33069 |
chr2 | 80300269 | 80300621 | E073 | 33372 |
chr2 | 80223967 | 80224059 | E074 | -42838 |
chr2 | 80277275 | 80277388 | E074 | 10378 |
chr2 | 80277406 | 80277679 | E074 | 10509 |
chr2 | 80286617 | 80286690 | E074 | 19720 |
chr2 | 80286695 | 80286771 | E074 | 19798 |
chr2 | 80286853 | 80286944 | E074 | 19956 |
chr2 | 80289143 | 80289292 | E074 | 22246 |
chr2 | 80299966 | 80300094 | E074 | 33069 |
chr2 | 80300269 | 80300621 | E074 | 33372 |
chr2 | 80239034 | 80239891 | E081 | -27006 |
chr2 | 80294822 | 80296016 | E081 | 27925 |
chr2 | 80277275 | 80277388 | E082 | 10378 |
chr2 | 80298893 | 80299580 | E082 | 31996 |
chr2 | 80299966 | 80300094 | E082 | 33069 |