rs10170918

Homo sapiens
A>G
CTNNA2 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0225 (6749/29960,GnomAD)
G=0189 (5519/29116,TOPMED)
G=0155 (776/5008,1000G)
G=0272 (1047/3854,ALSPAC)
G=0265 (981/3708,TWINSUK)
chr2:80039771 (GRCh38.p7) (2p12)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.80039771A>G
GRCh37.p13 chr 2NC_000002.11:g.80266897A>G

Gene: CTNNA2, catenin alpha 2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
CTNNA2 transcript variant 2NM_001164883.1:c.N/AIntron Variant
CTNNA2 transcript variant 3NM_001282597.2:c.N/AIntron Variant
CTNNA2 transcript variant 4NM_001282598.1:c.N/AIntron Variant
CTNNA2 transcript variant 1NM_004389.3:c.N/AIntron Variant
CTNNA2 transcript variant 5NM_001282599.1:c.N/AGenic Upstream Transcript Variant
CTNNA2 transcript variant 6NM_001282600.1:c.N/AGenic Upstream Transcript Variant
CTNNA2 transcript variant 7NM_001320810.1:c.N/AGenic Upstream Transcript Variant
CTNNA2 transcript variant X4XM_011532555.2:c.N/AIntron Variant
CTNNA2 transcript variant X2XM_011532556.2:c.N/AIntron Variant
CTNNA2 transcript variant X3XM_017003403.1:c.N/AIntron Variant
CTNNA2 transcript variant X4XM_017003404.1:c.N/AIntron Variant
CTNNA2 transcript variant X5XM_017003405.1:c.N/AIntron Variant
CTNNA2 transcript variant X9XM_011532557.2:c.N/AGenic Upstream Transcript Variant
CTNNA2 transcript variant X7XM_017003406.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.882G=0.118
1000GenomesAmericanSub694A=0.840G=0.160
1000GenomesEast AsianSub1008A=0.902G=0.098
1000GenomesEuropeSub1006A=0.718G=0.282
1000GenomesGlobalStudy-wide5008A=0.845G=0.155
1000GenomesSouth AsianSub978A=0.870G=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.728G=0.272
The Genome Aggregation DatabaseAfricanSub8712A=0.872G=0.128
The Genome Aggregation DatabaseAmericanSub836A=0.840G=0.160
The Genome Aggregation DatabaseEast AsianSub1620A=0.919G=0.081
The Genome Aggregation DatabaseEuropeSub18490A=0.713G=0.287
The Genome Aggregation DatabaseGlobalStudy-wide29960A=0.774G=0.225
The Genome Aggregation DatabaseOtherSub302A=0.790G=0.210
Trans-Omics for Precision MedicineGlobalStudy-wide29116A=0.810G=0.189
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.735G=0.265
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs101709180.000993alcohol dependence20201924

eQTL of rs10170918 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10170918 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr28024173180241829E067-25068
chr28024186880242116E067-24781
chr28027727580277388E06710378
chr28027740680277679E06710509
chr28028914380289292E06722246
chr28030026980300621E06733372
chr28025357280253730E068-13167
chr28028584180285959E06818944
chr28028661780286690E06819720
chr28028669580286771E06819798
chr28028685380286944E06819956
chr28028914380289292E06822246
chr28029996680300094E06833069
chr28030026980300621E06833372
chr28023532580235496E069-31401
chr28023585780236028E069-30869
chr28028914380289292E06922246
chr28030026980300621E06933372
chr28028914380289292E07022246
chr28024186880242116E071-24781
chr28024335980243646E071-23251
chr28027727580277388E07110378
chr28027740680277679E07110509
chr28028685380286944E07119956
chr28028914380289292E07122246
chr28029996680300094E07133069
chr28030026980300621E07133372
chr28025357280253730E072-13167
chr28027727580277388E07210378
chr28027740680277679E07210509
chr28028914380289292E07222246
chr28022020180220530E073-46367
chr28028914380289292E07322246
chr28029889380299580E07331996
chr28029996680300094E07333069
chr28030026980300621E07333372
chr28022396780224059E074-42838
chr28027727580277388E07410378
chr28027740680277679E07410509
chr28028661780286690E07419720
chr28028669580286771E07419798
chr28028685380286944E07419956
chr28028914380289292E07422246
chr28029996680300094E07433069
chr28030026980300621E07433372
chr28023903480239891E081-27006
chr28029482280296016E08127925
chr28027727580277388E08210378
chr28029889380299580E08231996
chr28029996680300094E08233069