SNP Detail Info-rs10197202

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.196658242G>A
GRCh37.p13 chr 2	NC_000002.11:g.197522966G>A

Molecule type	Change	Amino acid[Codon]	SO Term
CCDC150 transcript variant 1	NM_001080539.1:c.	N/A	Intron Variant
CCDC150 transcript variant X1	XM_006712438.3:c.	N/A	Intron Variant
CCDC150 transcript variant X5	XM_011510985.2:c.	N/A	Intron Variant
CCDC150 transcript variant X12	XM_011510988.2:c.	N/A	Intron Variant
CCDC150 transcript variant X2	XM_017003861.1:c.	N/A	Intron Variant
CCDC150 transcript variant X3	XM_017003862.1:c.	N/A	Intron Variant
CCDC150 transcript variant X4	XM_017003863.1:c.	N/A	Intron Variant
CCDC150 transcript variant X6	XM_017003864.1:c.	N/A	Intron Variant
CCDC150 transcript variant X7	XM_017003865.1:c.	N/A	Intron Variant
CCDC150 transcript variant X13	XM_006712439.3:c.	N/A	Genic Upstream Transcript Variant
CCDC150 transcript variant X9	XM_011510987.2:c.	N/A	Genic Upstream Transcript Variant
CCDC150 transcript variant X8	XM_017003866.1:c.	N/A	Genic Upstream Transcript Variant
CCDC150 transcript variant X10	XR_001738711.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.219	A=0.781
1000Genomes	American	Sub	694	G=0.150	A=0.850
1000Genomes	East Asian	Sub	1008	G=0.175	A=0.825
1000Genomes	Europe	Sub	1006	G=0.252	A=0.748
1000Genomes	Global	Study-wide	5008	G=0.195	A=0.805
1000Genomes	South Asian	Sub	978	G=0.160	A=0.840
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.252	A=0.748
The Genome Aggregation Database	African	Sub	8706	G=0.224	A=0.776
The Genome Aggregation Database	American	Sub	828	G=0.160	A=0.840
The Genome Aggregation Database	East Asian	Sub	1610	G=0.191	A=0.809
The Genome Aggregation Database	Europe	Sub	18438	G=0.244	A=0.755
The Genome Aggregation Database	Global	Study-wide	29884	G=0.233	A=0.766
The Genome Aggregation Database	Other	Sub	302	G=0.210	A=0.790
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.237	A=0.762
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.265	A=0.735

PMID	Title	Author	Journal
21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Heath AC	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs10197202	1.3E-05	alcoholism (heaviness of drinking)	21529783

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	197503172	197503239	E067	-19727
chr2	197520188	197520429	E068	-2537
chr2	197520188	197520429	E070	-2537
chr2	197520608	197520908	E070	-2058
chr2	197533867	197534111	E071	10901

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr2	197503761	197503831	E067	-19135
chr2	197503920	197504956	E067	-18010
chr2	197503761	197503831	E068	-19135
chr2	197503920	197504956	E068	-18010
chr2	197503761	197503831	E069	-19135
chr2	197503920	197504956	E069	-18010
chr2	197503920	197504956	E070	-18010
chr2	197505062	197505320	E070	-17646
chr2	197503761	197503831	E071	-19135
chr2	197503920	197504956	E071	-18010
chr2	197503761	197503831	E072	-19135
chr2	197503920	197504956	E072	-18010
chr2	197503761	197503831	E073	-19135
chr2	197503920	197504956	E073	-18010
chr2	197503920	197504956	E074	-18010
chr2	197503761	197503831	E081	-19135
chr2	197503920	197504956	E081	-18010
chr2	197505062	197505320	E081	-17646
chr2	197503761	197503831	E082	-19135
chr2	197503920	197504956	E082	-18010
chr2	197505062	197505320	E082	-17646

rs10197202