rs10241695

Homo sapiens
C>T
LOC101927497 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0043 (1304/29952,GnomAD)
T=0059 (1743/29118,TOPMED)
T=0042 (208/5008,1000G)
T=0032 (123/3854,ALSPAC)
T=0033 (121/3708,TWINSUK)
chr7:92913535 (GRCh38.p7) (7q21.2)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.92913535C>T
GRCh37.p13 chr 7NC_000007.13:g.92542849C>T

Gene: LOC101927497, uncharacterized LOC101927497(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC101927497 transcript variant 1NR_110086.1:n.N/AIntron Variant
LOC101927497 transcript variant 2NR_110087.1:n.N/AIntron Variant
LOC101927497 transcript variant 3NR_110088.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.898T=0.102
1000GenomesAmericanSub694C=0.970T=0.030
1000GenomesEast AsianSub1008C=0.999T=0.001
1000GenomesEuropeSub1006C=0.964T=0.036
1000GenomesGlobalStudy-wide5008C=0.958T=0.042
1000GenomesSouth AsianSub978C=0.990T=0.010
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.968T=0.032
The Genome Aggregation DatabaseAfricanSub8712C=0.913T=0.087
The Genome Aggregation DatabaseAmericanSub836C=0.970T=0.030
The Genome Aggregation DatabaseEast AsianSub1620C=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18482C=0.972T=0.027
The Genome Aggregation DatabaseGlobalStudy-wide29952C=0.956T=0.043
The Genome Aggregation DatabaseOtherSub302C=0.940T=0.060
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.940T=0.059
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.967T=0.033
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs102416950.000561alcohol dependence21314694

eQTL of rs10241695 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10241695 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr79254585492546802E0683005
chr79254585492546802E0823005