rs1024826

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0166 (4989/29954,GnomAD)
C=0234 (6821/29118,TOPMED)
C=0204 (1020/5008,1000G)
C=0012 (45/3854,ALSPAC)
C=0012 (43/3708,TWINSUK)
chr17:72151440 (GRCh38.p7) (17q24.3)
AD
GWASdb2
1   publication(s)
See rs on genome
160 Enhancers around
33 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 17NC_000017.11:g.72151440T>C
GRCh37.p13 chr 17NC_000017.10:g.70147581T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.391C=0.609
1000GenomesAmericanSub694T=0.930C=0.070
1000GenomesEast AsianSub1008T=0.877C=0.123
1000GenomesEuropeSub1006T=0.981C=0.019
1000GenomesGlobalStudy-wide5008T=0.796C=0.204
1000GenomesSouth AsianSub978T=0.980C=0.020
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.988C=0.012
The Genome Aggregation DatabaseAfricanSub8704T=0.497C=0.503
The Genome Aggregation DatabaseAmericanSub838T=0.930C=0.070
The Genome Aggregation DatabaseEast AsianSub1616T=0.861C=0.139
The Genome Aggregation DatabaseEuropeSub18494T=0.982C=0.017
The Genome Aggregation DatabaseGlobalStudy-wide29954T=0.833C=0.166
The Genome Aggregation DatabaseOtherSub302T=0.990C=0.010
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.765C=0.234
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.988C=0.012
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs10248260.000265alcohol dependence20201924

eQTL of rs1024826 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1024826 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr177013759170137705E067-9876
chr177013792270138002E067-9579
chr177014691270148305E0670
chr177014832370148410E067742
chr177014842370148476E067842
chr177014856770149032E067986
chr177016756170167601E06719980
chr177016797170168471E06720390
chr177017954570179595E06731964
chr177018166570182155E06734084
chr177018228170182480E06734700
chr177010456170104612E068-42969
chr177010465670104818E068-42763
chr177012176170121815E068-25766
chr177012197570122131E068-25450
chr177012235070122518E068-25063
chr177012253970123839E068-23742
chr177012384270123956E068-23625
chr177012397970124029E068-23552
chr177012406770124191E068-23390
chr177014842370148476E068842
chr177014856770149032E068986
chr177014916670149224E0681585
chr177016219770162513E06814616
chr177016756170167601E06819980
chr177016878570168846E06821204
chr177017179670171918E06824215
chr177017199170172302E06824410
chr177017244070172516E06824859
chr177017251770172897E06824936
chr177017298770173766E06825406
chr177017905170179156E06831470
chr177017954570179595E06831964
chr177018816070189391E06840579
chr177014691270148305E0690
chr177014832370148410E069742
chr177014842370148476E069842
chr177014856770149032E069986
chr177014916670149224E0691585
chr177016219770162513E06914616
chr177016756170167601E06919980
chr177017251770172897E06924936
chr177018942070189911E06941839
chr177010318770103505E070-44076
chr177010353070103589E070-43992
chr177010368170103921E070-43660
chr177010395070104131E070-43450
chr177010456170104612E070-42969
chr177010465670104818E070-42763
chr177010655770106633E070-40948
chr177010707470107272E070-40309
chr177010729870107365E070-40216
chr177010743970107925E070-39656
chr177010799770108047E070-39534
chr177012253970123839E070-23742
chr177012384270123956E070-23625
chr177012397970124029E070-23552
chr177014916670149224E0701585
chr177014960170149651E0702020
chr177016127570161457E07013694
chr177016147270162133E07013891
chr177016219770162513E07014616
chr177016756170167601E07019980
chr177016797170168471E07020390
chr177016851970168703E07020938
chr177016878570168846E07021204
chr177017119670171268E07023615
chr177017131870171493E07023737
chr177017151470171696E07023933
chr177017179670171918E07024215
chr177017199170172302E07024410
chr177017244070172516E07024859
chr177017251770172897E07024936
chr177017298770173766E07025406
chr177017850270178992E07030921
chr177017905170179156E07031470
chr177017954570179595E07031964
chr177009848070098866E071-48715
chr177009887370098925E071-48656
chr177012235070122518E071-25063
chr177012253970123839E071-23742
chr177012384270123956E071-23625
chr177012397970124029E071-23552
chr177012406770124191E071-23390
chr177014856770149032E071986
chr177016219770162513E07114616
chr177016756170167601E07119980
chr177016969370169956E07122112
chr177017002070170105E07122439
chr177017017170170321E07122590
chr177017251770172897E07124936
chr177017954570179595E07131964
chr177018337370184211E07135792
chr177018422470184354E07136643
chr177018435770184508E07136776
chr177014842370148476E072842
chr177014856770149032E072986
chr177016147270162133E07213891
chr177016219770162513E07214616
chr177016756170167601E07219980
chr177016797170168471E07220390
chr177016851970168703E07220938
chr177014691270148305E0730
chr177014832370148410E073742
chr177016562770165671E07318046
chr177016797170168471E07320390
chr177016851970168703E07320938
chr177017151470171696E07323933
chr177017179670171918E07324215
chr177017199170172302E07324410
chr177017244070172516E07324859
chr177017251770172897E07324936
chr177010353070103589E074-43992
chr177012105270121343E074-26238
chr177012136070121631E074-25950
chr177012176170121815E074-25766
chr177012197570122131E074-25450
chr177013759170137705E074-9876
chr177013792270138002E074-9579
chr177014657570146662E074-919
chr177014672970146779E074-802
chr177014842370148476E074842
chr177014856770149032E074986
chr177016127570161457E07413694
chr177016147270162133E07413891
chr177016219770162513E07414616
chr177016756170167601E07419980
chr177016797170168471E07420390
chr177012253970123839E081-23742
chr177012384270123956E081-23625
chr177012397970124029E081-23552
chr177014691270148305E0810
chr177014832370148410E081742
chr177014842370148476E081842
chr177014856770149032E081986
chr177014916670149224E0811585
chr177016797170168471E08120390
chr177016851970168703E08120938
chr177016878570168846E08121204
chr177017850270178992E08130921
chr177017905170179156E08131470
chr177012384270123956E082-23625
chr177012397970124029E082-23552
chr177012406770124191E082-23390
chr177012424670124522E082-23059
chr177014691270148305E0820
chr177014832370148410E082742
chr177014842370148476E082842
chr177014856770149032E082986
chr177014916670149224E0821585
chr177014960170149651E0822020
chr177016147270162133E08213891
chr177016219770162513E08214616
chr177016756170167601E08219980
chr177016797170168471E08220390
chr177016851970168703E08220938
chr177016878570168846E08221204
chr177016903170169087E08221450
chr177016958570169635E08222004
chr177016969370169956E08222112










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr177011183770115755E067-31826
chr177011583170120037E067-27544
chr177012009770120899E067-26682
chr177011183770115755E068-31826
chr177011583170120037E068-27544
chr177012009770120899E068-26682
chr177012099070121040E068-26541
chr177011183770115755E069-31826
chr177011583170120037E069-27544
chr177012009770120899E069-26682
chr177012099070121040E069-26541
chr177011183770115755E070-31826
chr177011583170120037E070-27544
chr177012009770120899E070-26682
chr177012099070121040E070-26541
chr177011183770115755E071-31826
chr177011583170120037E071-27544
chr177011183770115755E072-31826
chr177011583170120037E072-27544
chr177012099070121040E072-26541
chr177011183770115755E073-31826
chr177011583170120037E073-27544
chr177012009770120899E073-26682
chr177012099070121040E073-26541
chr177011183770115755E074-31826
chr177011583170120037E074-27544
chr177012009770120899E074-26682
chr177012009770120899E081-26682
chr177012099070121040E081-26541
chr177011183770115755E082-31826
chr177011583170120037E082-27544
chr177012009770120899E082-26682
chr177012099070121040E082-26541