SNP Detail Info-rs10259781

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0096 (2892/29960,GnomAD)
A=0105 (3077/29118,TOPMED)
A=0086 (429/5008,1000G)
A=0056 (214/3854,ALSPAC)
A=0070 (258/3708,TWINSUK)

Position: chr7:153169940 (GRCh38.p7) (7q36.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.153169940G>A
GRCh37.p13 chr 7	NC_000007.13:g.152867025G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.805	A=0.195
1000Genomes	American	Sub	694	G=0.940	A=0.060
1000Genomes	East Asian	Sub	1008	G=0.997	A=0.003
1000Genomes	Europe	Sub	1006	G=0.932	A=0.068
1000Genomes	Global	Study-wide	5008	G=0.914	A=0.086
1000Genomes	South Asian	Sub	978	G=0.940	A=0.060
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.944	A=0.056
The Genome Aggregation Database	African	Sub	8710	G=0.818	A=0.182
The Genome Aggregation Database	American	Sub	838	G=0.950	A=0.050
The Genome Aggregation Database	East Asian	Sub	1620	G=0.997	A=0.003
The Genome Aggregation Database	Europe	Sub	18492	G=0.932	A=0.067
The Genome Aggregation Database	Global	Study-wide	29960	G=0.903	A=0.096
The Genome Aggregation Database	Other	Sub	300	G=0.960	A=0.040
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.894	A=0.105
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.930	A=0.070

PMID	Title	Author	Journal
23953852	Genome-wide association studies of maximum number of drinks.	Pan Y	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs10259781	6.95E-05	alcohol consumption	23953852

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs10259781