rs1026028

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0270 (8097/29896,GnomAD)
A=0273 (7966/29118,TOPMED)
A=0198 (994/5008,1000G)
A=0338 (1302/3854,ALSPAC)
A=0351 (1302/3708,TWINSUK)
chr2:176206028 (GRCh38.p7) (2q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
20 Enhancers around
12 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.176206028C>A
GRCh37.p13 chr 2NC_000002.11:g.177070756C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.807A=0.193
1000GenomesAmericanSub694C=0.810A=0.190
1000GenomesEast AsianSub1008C=0.938A=0.062
1000GenomesEuropeSub1006C=0.662A=0.338
1000GenomesGlobalStudy-wide5008C=0.802A=0.198
1000GenomesSouth AsianSub978C=0.790A=0.210
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.662A=0.338
The Genome Aggregation DatabaseAfricanSub8700C=0.797A=0.203
The Genome Aggregation DatabaseAmericanSub838C=0.810A=0.190
The Genome Aggregation DatabaseEast AsianSub1618C=0.928A=0.072
The Genome Aggregation DatabaseEuropeSub18438C=0.677A=0.322
The Genome Aggregation DatabaseGlobalStudy-wide29896C=0.729A=0.270
The Genome Aggregation DatabaseOtherSub302C=0.630A=0.370
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.726A=0.273
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.649A=0.351
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs10260283.41E-06alcohol dependence23089632

eQTL of rs1026028 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1026028 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2177056266177056434E067-14322
chr2177057173177057353E067-13403
chr2177107016177107202E06736260
chr2177107374177107457E06736618
chr2177057746177058334E068-12422
chr2177056266177056434E069-14322
chr2177057173177057353E069-13403
chr2177098836177099229E06928080
chr2177099284177099390E06928528
chr2177099442177099512E06928686
chr2177107016177107202E06936260
chr2177107374177107457E06936618
chr2177040485177040739E071-30017
chr2177056266177056434E071-14322
chr2177098836177099229E07128080
chr2177099284177099390E07128528
chr2177107016177107202E07236260
chr2177099621177100012E07428865
chr2177107016177107202E07436260
chr2177107374177107457E07436618






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr2177042446177043741E067-27015
chr2177051720177055245E067-15511
chr2177111567177111683E06740811
chr2177051720177055245E068-15511
chr2177042446177043741E069-27015
chr2177051720177055245E069-15511
chr2177051720177055245E071-15511
chr2177051720177055245E072-15511
chr2177051720177055245E073-15511
chr2177042446177043741E074-27015
chr2177051720177055245E074-15511
chr2177111567177111683E07440811