rs10263613

Homo sapiens
G>A
LOC105375563 : Non Coding Transcript Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0076 (2294/29962,GnomAD)
A=0105 (3059/29118,TOPMED)
A=0097 (486/5008,1000G)
A=0011 (41/3854,ALSPAC)
A=0008 (29/3708,TWINSUK)
chr7:150363074 (GRCh38.p7) (7q36.1)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.150363074G>A
GRCh37.p13 chr 7NC_000007.13:g.150060163G>A

Gene: LOC105375563, uncharacterized LOC105375563(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105375563 transcript variant X1XR_928157.2:n.119...XR_928157.2:n.1194C>TC>TNon Coding Transcript Variant
LOC105375563 transcript variant X2XR_928159.2:n.118...XR_928159.2:n.1186C>TC>TNon Coding Transcript Variant
LOC105375563 transcript variant X3XR_928158.2:n.119...XR_928158.2:n.1192C>TC>TNon Coding Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.736A=0.264
1000GenomesAmericanSub694G=0.960A=0.040
1000GenomesEast AsianSub1008G=0.964A=0.036
1000GenomesEuropeSub1006G=0.984A=0.016
1000GenomesGlobalStudy-wide5008G=0.903A=0.097
1000GenomesSouth AsianSub978G=0.940A=0.060
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.989A=0.011
The Genome Aggregation DatabaseAfricanSub8714G=0.781A=0.219
The Genome Aggregation DatabaseAmericanSub838G=0.950A=0.050
The Genome Aggregation DatabaseEast AsianSub1622G=0.968A=0.032
The Genome Aggregation DatabaseEuropeSub18486G=0.984A=0.015
The Genome Aggregation DatabaseGlobalStudy-wide29962G=0.923A=0.076
The Genome Aggregation DatabaseOtherSub302G=0.970A=0.030
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.894A=0.105
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.992A=0.008
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs102636130.000894alcohol dependence20201924

eQTL of rs10263613 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10263613 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr7150069866150069985E0679703
chr7150070004150070064E0679841
chr7150070129150070179E0679966
chr7150070190150070930E06710027
chr7150070961150071021E06710798
chr7150071237150071415E06711074
chr7150071505150072014E06711342
chr7150077409150078426E06717246
chr7150078487150078596E06718324
chr7150078768150078872E06718605
chr7150078959150079195E06718796
chr7150079267150079335E06719104
chr7150079356150079698E06719193
chr7150079714150080407E06719551
chr7150082049150082206E06721886
chr7150082312150082825E06722149
chr7150082914150082999E06722751
chr7150083046150083096E06722883
chr7150083505150083555E06723342
chr7150083644150083796E06723481
chr7150083806150084099E06723643
chr7150085169150085237E06725006
chr7150085355150085439E06725192
chr7150085443150085493E06725280
chr7150085534150085588E06725371
chr7150085693150086526E06725530
chr7150026467150026718E068-33445
chr7150026768150027567E068-32596
chr7150035654150035724E068-24439
chr7150035871150035970E068-24193
chr7150036001150036131E068-24032
chr7150036406150036463E068-23700
chr7150036472150036571E068-23592
chr7150053389150054096E068-6067
chr7150060508150060860E068345
chr7150060898150061469E068735
chr7150068410150068450E0688247
chr7150068498150068553E0688335
chr7150068628150068800E0688465
chr7150077409150078426E06817246
chr7150078487150078596E06818324
chr7150078768150078872E06818605
chr7150078959150079195E06818796
chr7150079267150079335E06819104
chr7150079356150079698E06819193
chr7150082914150082999E06822751
chr7150083046150083096E06822883
chr7150083505150083555E06823342
chr7150083644150083796E06823481
chr7150083806150084099E06823643
chr7150085020150085117E06824857
chr7150085169150085237E06825006
chr7150085355150085439E06825192
chr7150085443150085493E06825280
chr7150085534150085588E06825371
chr7150085693150086526E06825530
chr7150086594150086759E06826431
chr7150092696150092786E06832533
chr7150092850150092900E06832687
chr7150100325150100437E06840162
chr7150100674150100749E06840511
chr7150100795150100988E06840632
chr7150107539150107612E06847376
chr7150107657150107720E06847494
chr7150107759150107812E06847596
chr7150107876150107949E06847713
chr7150108054150108697E06847891
chr7150026768150027567E069-32596
chr7150036406150036463E069-23700
chr7150036472150036571E069-23592
chr7150069866150069985E0699703
chr7150070004150070064E0699841
chr7150070129150070179E0699966
chr7150070190150070930E06910027
chr7150070961150071021E06910798
chr7150071237150071415E06911074
chr7150078487150078596E06918324
chr7150078768150078872E06918605
chr7150078959150079195E06918796
chr7150082049150082206E06921886
chr7150082312150082825E06922149
chr7150082914150082999E06922751
chr7150083046150083096E06922883
chr7150083505150083555E06923342
chr7150083644150083796E06923481
chr7150083806150084099E06923643
chr7150085020150085117E06924857
chr7150085169150085237E06925006
chr7150085355150085439E06925192
chr7150085443150085493E06925280
chr7150085534150085588E06925371
chr7150085693150086526E06925530
chr7150086594150086759E06926431
chr7150100325150100437E06940162
chr7150100674150100749E06940511
chr7150100795150100988E06940632
chr7150107759150107812E06947596
chr7150107876150107949E06947713
chr7150108054150108697E06947891
chr7150026467150026718E070-33445
chr7150026768150027567E070-32596
chr7150032145150033249E070-26914
chr7150033260150033372E070-26791
chr7150033543150033621E070-26542
chr7150033681150033913E070-26250
chr7150034858150035167E070-24996
chr7150035218150035268E070-24895
chr7150035331150035466E070-24697
chr7150035507150035557E070-24606
chr7150035654150035724E070-24439
chr7150035871150035970E070-24193
chr7150036001150036131E070-24032
chr7150036406150036463E070-23700
chr7150036472150036571E070-23592
chr7150058372150058427E070-1736
chr7150058559150059696E070-467
chr7150064655150064750E0704492
chr7150068410150068450E0708247
chr7150068498150068553E0708335
chr7150068628150068800E0708465
chr7150068894150068959E0708731
chr7150082914150082999E07022751
chr7150085693150086526E07025530
chr7150100795150100988E07040632
chr7150026467150026718E071-33445
chr7150026768150027567E071-32596
chr7150027609150027769E071-32394
chr7150032145150033249E071-26914
chr7150036001150036131E071-24032
chr7150060898150061469E071735
chr7150061549150061686E0711386
chr7150070961150071021E07110798
chr7150071237150071415E07111074
chr7150077409150078426E07117246
chr7150078487150078596E07118324
chr7150078768150078872E07118605
chr7150078959150079195E07118796
chr7150079267150079335E07119104
chr7150082914150082999E07122751
chr7150083046150083096E07122883
chr7150083505150083555E07123342
chr7150083644150083796E07123481
chr7150083806150084099E07123643
chr7150085020150085117E07124857
chr7150085169150085237E07125006
chr7150085355150085439E07125192
chr7150085443150085493E07125280
chr7150085534150085588E07125371
chr7150085693150086526E07125530
chr7150086594150086759E07126431
chr7150092696150092786E07132533
chr7150092850150092900E07132687
chr7150100325150100437E07140162
chr7150100674150100749E07140511
chr7150100795150100988E07140632
chr7150107089150107330E07146926
chr7150107379150107439E07147216
chr7150107470150107520E07147307
chr7150107539150107612E07147376
chr7150107657150107720E07147494
chr7150107759150107812E07147596
chr7150107876150107949E07147713
chr7150108054150108697E07147891
chr7150026467150026718E072-33445
chr7150026768150027567E072-32596
chr7150035654150035724E072-24439
chr7150035871150035970E072-24193
chr7150036001150036131E072-24032
chr7150036406150036463E072-23700
chr7150036472150036571E072-23592
chr7150068410150068450E0728247
chr7150068498150068553E0728335
chr7150070004150070064E0729841
chr7150070129150070179E0729966
chr7150070190150070930E07210027
chr7150077409150078426E07217246
chr7150078487150078596E07218324
chr7150078768150078872E07218605
chr7150078959150079195E07218796
chr7150079267150079335E07219104
chr7150079356150079698E07219193
chr7150079714150080407E07219551
chr7150082049150082206E07221886
chr7150082914150082999E07222751
chr7150083046150083096E07222883
chr7150083505150083555E07223342
chr7150083644150083796E07223481
chr7150083806150084099E07223643
chr7150084521150084581E07224358
chr7150085020150085117E07224857
chr7150085169150085237E07225006
chr7150085355150085439E07225192
chr7150085443150085493E07225280
chr7150085534150085588E07225371
chr7150085693150086526E07225530
chr7150086594150086759E07226431
chr7150026467150026718E073-33445
chr7150026768150027567E073-32596
chr7150032145150033249E073-26914
chr7150033260150033372E073-26791
chr7150068410150068450E0738247
chr7150068498150068553E0738335
chr7150068628150068800E0738465
chr7150070004150070064E0739841
chr7150070129150070179E0739966
chr7150070190150070930E07310027
chr7150072996150073654E07312833
chr7150073720150074032E07313557
chr7150077409150078426E07317246
chr7150078487150078596E07318324
chr7150078768150078872E07318605
chr7150078959150079195E07318796
chr7150079267150079335E07319104
chr7150079356150079698E07319193
chr7150082914150082999E07322751
chr7150083046150083096E07322883
chr7150083505150083555E07323342
chr7150083644150083796E07323481
chr7150083806150084099E07323643
chr7150085020150085117E07324857
chr7150085169150085237E07325006
chr7150085355150085439E07325192
chr7150085443150085493E07325280
chr7150085534150085588E07325371
chr7150085693150086526E07325530
chr7150086594150086759E07326431
chr7150100674150100749E07340511
chr7150100795150100988E07340632
chr7150107379150107439E07347216
chr7150107470150107520E07347307
chr7150107539150107612E07347376
chr7150107657150107720E07347494
chr7150107759150107812E07347596
chr7150107876150107949E07347713
chr7150108054150108697E07347891
chr7150070190150070930E07410027
chr7150077409150078426E07417246
chr7150078487150078596E07418324
chr7150078768150078872E07418605
chr7150078959150079195E07418796
chr7150079267150079335E07419104
chr7150079356150079698E07419193
chr7150082049150082206E07421886
chr7150082312150082825E07422149
chr7150082914150082999E07422751
chr7150083046150083096E07422883
chr7150083505150083555E07423342
chr7150083644150083796E07423481
chr7150083806150084099E07423643
chr7150085020150085117E07424857
chr7150085169150085237E07425006
chr7150085355150085439E07425192
chr7150085443150085493E07425280
chr7150085534150085588E07425371
chr7150085693150086526E07425530
chr7150086594150086759E07426431
chr7150100325150100437E07440162
chr7150100674150100749E07440511
chr7150100795150100988E07440632
chr7150107379150107439E07447216
chr7150107470150107520E07447307
chr7150107539150107612E07447376
chr7150107657150107720E07447494
chr7150107759150107812E07447596
chr7150107876150107949E07447713
chr7150108054150108697E07447891
chr7150108802150108885E07448639
chr7150022313150022791E081-37372
chr7150035654150035724E081-24439
chr7150035871150035970E081-24193
chr7150036001150036131E081-24032
chr7150036406150036463E081-23700
chr7150036472150036571E081-23592
chr7150068410150068450E0818247
chr7150068498150068553E0818335
chr7150068628150068800E0818465
chr7150068894150068959E0818731
chr7150077409150078426E08117246
chr7150078487150078596E08118324
chr7150078768150078872E08118605
chr7150078959150079195E08118796
chr7150079267150079335E08119104
chr7150079356150079698E08119193
chr7150079714150080407E08119551
chr7150080412150080629E08120249
chr7150080669150081545E08120506
chr7150081562150081944E08121399
chr7150082049150082206E08121886
chr7150082312150082825E08122149
chr7150082914150082999E08122751
chr7150083046150083096E08122883
chr7150083505150083555E08123342
chr7150083644150083796E08123481
chr7150085020150085117E08124857
chr7150085169150085237E08125006
chr7150085355150085439E08125192
chr7150085443150085493E08125280
chr7150085534150085588E08125371
chr7150085693150086526E08125530
chr7150100674150100749E08140511
chr7150100795150100988E08140632
chr7150019041150019114E082-41049
chr7150022313150022791E082-37372
chr7150064655150064750E0824492
chr7150070190150070930E08210027
chr7150070961150071021E08210798
chr7150071237150071415E08211074
chr7150071505150072014E08211342
chr7150081562150081944E08221399
chr7150082049150082206E08221886
chr7150082312150082825E08222149
chr7150085020150085117E08224857
chr7150085169150085237E08225006
chr7150085355150085439E08225192
chr7150085443150085493E08225280
chr7150085534150085588E08225371
chr7150085693150086526E08225530










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr7150019117150022300E067-37863
chr7150037913150038280E067-21883
chr7150064777150068255E0674614
chr7150074287150077403E06714124
chr7150019117150022300E068-37863
chr7150036653150037879E068-22284
chr7150037913150038280E068-21883
chr7150038328150039374E068-20789
chr7150064777150068255E0684614
chr7150074287150077403E06814124
chr7150019117150022300E069-37863
chr7150038328150039374E069-20789
chr7150064777150068255E0694614
chr7150074287150077403E06914124
chr7150019117150022300E070-37863
chr7150038328150039374E070-20789
chr7150064777150068255E0704614
chr7150074287150077403E07014124
chr7150019117150022300E071-37863
chr7150064777150068255E0714614
chr7150074287150077403E07114124
chr7150019117150022300E072-37863
chr7150037913150038280E072-21883
chr7150038328150039374E072-20789
chr7150064777150068255E0724614
chr7150074287150077403E07214124
chr7150019117150022300E073-37863
chr7150037913150038280E073-21883
chr7150064777150068255E0734614
chr7150074287150077403E07314124
chr7150019117150022300E074-37863
chr7150037913150038280E074-21883
chr7150038328150039374E074-20789
chr7150064777150068255E0744614
chr7150074287150077403E07414124
chr7150019117150022300E081-37863
chr7150074287150077403E08114124
chr7150019117150022300E082-37863
chr7150037913150038280E082-21883
chr7150064777150068255E0824614
chr7150074287150077403E08214124