SNP Detail Info-rs10272660

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0074 (2226/29960,GnomAD)
G=0094 (2759/29118,TOPMED)
G=0087 (434/5008,1000G)
G=0050 (193/3854,ALSPAC)
G=0053 (197/3708,TWINSUK)

Position: chr7:89374270 (GRCh38.p7) (7q21.13)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.89374270A>G
GRCh37.p13 chr 7	NC_000007.13:g.89003584A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.841	G=0.159
1000Genomes	American	Sub	694	A=0.940	G=0.060
1000Genomes	East Asian	Sub	1008	A=0.939	G=0.061
1000Genomes	Europe	Sub	1006	A=0.944	G=0.056
1000Genomes	Global	Study-wide	5008	A=0.913	G=0.087
1000Genomes	South Asian	Sub	978	A=0.930	G=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.950	G=0.050
The Genome Aggregation Database	African	Sub	8718	A=0.859	G=0.141
The Genome Aggregation Database	American	Sub	838	A=0.920	G=0.080
The Genome Aggregation Database	East Asian	Sub	1620	A=0.952	G=0.048
The Genome Aggregation Database	Europe	Sub	18482	A=0.955	G=0.044
The Genome Aggregation Database	Global	Study-wide	29960	A=0.925	G=0.074
The Genome Aggregation Database	Other	Sub	302	A=0.890	G=0.110
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.905	G=0.094
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.947	G=0.053

PMID	Title	Author	Journal
22072270	Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.	Wang KS	J Neural Transm (Vienna)

SNP ID	p-value	Traits	Study
rs10272660	9.99E-05	alcohol withdrawal symptoms	22072270

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs10272660