rs10272660

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0074 (2226/29960,GnomAD)
G=0094 (2759/29118,TOPMED)
G=0087 (434/5008,1000G)
G=0050 (193/3854,ALSPAC)
G=0053 (197/3708,TWINSUK)
chr7:89374270 (GRCh38.p7) (7q21.13)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.89374270A>G
GRCh37.p13 chr 7NC_000007.13:g.89003584A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.841G=0.159
1000GenomesAmericanSub694A=0.940G=0.060
1000GenomesEast AsianSub1008A=0.939G=0.061
1000GenomesEuropeSub1006A=0.944G=0.056
1000GenomesGlobalStudy-wide5008A=0.913G=0.087
1000GenomesSouth AsianSub978A=0.930G=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.950G=0.050
The Genome Aggregation DatabaseAfricanSub8718A=0.859G=0.141
The Genome Aggregation DatabaseAmericanSub838A=0.920G=0.080
The Genome Aggregation DatabaseEast AsianSub1620A=0.952G=0.048
The Genome Aggregation DatabaseEuropeSub18482A=0.955G=0.044
The Genome Aggregation DatabaseGlobalStudy-wide29960A=0.925G=0.074
The Genome Aggregation DatabaseOtherSub302A=0.890G=0.110
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.905G=0.094
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.947G=0.053
PMID Title Author Journal
22072270Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.Wang KSJ Neural Transm (Vienna)

P-Value

SNP ID p-value Traits Study
rs102726609.99E-05alcohol withdrawal symptoms22072270

eQTL of rs10272660 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10272660 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.