SNP Detail Info-rs10281955

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0131 (3929/29982,GnomAD)
G==0182 (5318/29118,TOPMED)
G==0145 (726/5008,1000G)
G==0081 (313/3854,ALSPAC)
G==0079 (293/3708,TWINSUK)

Position: chr7:118944637 (GRCh38.p7) (7q31.31)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.118944637G>A
GRCh37.p13 chr 7	NC_000007.13:g.118584691G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.345	A=0.655
1000Genomes	American	Sub	694	G=0.100	A=0.900
1000Genomes	East Asian	Sub	1008	G=0.081	A=0.919
1000Genomes	Europe	Sub	1006	G=0.073	A=0.927
1000Genomes	Global	Study-wide	5008	G=0.145	A=0.855
1000Genomes	South Asian	Sub	978	G=0.050	A=0.950
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.081	A=0.919
The Genome Aggregation Database	African	Sub	8716	G=0.302	A=0.698
The Genome Aggregation Database	American	Sub	838	G=0.110	A=0.890
The Genome Aggregation Database	East Asian	Sub	1620	G=0.093	A=0.907
The Genome Aggregation Database	Europe	Sub	18506	G=0.055	A=0.945
The Genome Aggregation Database	Global	Study-wide	29982	G=0.131	A=0.869
The Genome Aggregation Database	Other	Sub	302	G=0.120	A=0.880
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.182	A=0.817
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.079	A=0.921

PMID	Title	Author	Journal
22613542	ANKRD7 and CYTL1 are novel risk genes for alcohol drinking behavior.	Chen XD	Chin Med J (Engl)

SNP ID	p-value	Traits	Study
rs10281955	8.72E-07	alcohol consumption	22613542

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr7	118614632	118614702	E081	29941
chr7	118614812	118615340	E081	30121

rs10281955