Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 14 | NC_000014.9:g.70111982A>G |
GRCh37.p13 chr 14 | NC_000014.8:g.70578699A>G |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
SLC8A3 transcript variant a | NM_033262.4:c. | N/A | Intron Variant |
SLC8A3 transcript variant b | NM_058240.3:c. | N/A | Intron Variant |
SLC8A3 transcript variant d | NM_182932.2:c. | N/A | Intron Variant |
SLC8A3 transcript variant c | NM_183002.2:c. | N/A | Intron Variant |
SLC8A3 transcript variant g | NM_001130417.2:c. | N/A | Genic Upstream Transcript Variant |
SLC8A3 transcript variant f | NM_182936.2:c. | N/A | Genic Upstream Transcript Variant |
SLC8A3 transcript variant h | NR_104122.1:n. | N/A | Intron Variant |
SLC8A3 transcript variant X1 | XM_017021606.1:c. | N/A | Intron Variant |
SLC8A3 transcript variant X2 | XM_017021607.1:c. | N/A | Intron Variant |
SLC8A3 transcript variant X3 | XM_017021608.1:c. | N/A | Intron Variant |
SLC8A3 transcript variant X4 | XM_017021609.1:c. | N/A | Intron Variant |
SLC8A3 transcript variant X7 | XM_006720240.3:c. | N/A | Genic Upstream Transcript Variant |
SLC8A3 transcript variant X6 | XM_017021611.1:c. | N/A | Genic Upstream Transcript Variant |
SLC8A3 transcript variant X5 | XM_017021610.1:c. | N/A | Genic Downstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.598 | G=0.402 |
1000Genomes | American | Sub | 694 | A=0.510 | G=0.490 |
1000Genomes | East Asian | Sub | 1008 | A=0.062 | G=0.938 |
1000Genomes | Europe | Sub | 1006 | A=0.583 | G=0.417 |
1000Genomes | Global | Study-wide | 5008 | A=0.411 | G=0.589 |
1000Genomes | South Asian | Sub | 978 | A=0.270 | G=0.730 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.592 | G=0.408 |
The Genome Aggregation Database | African | Sub | 8682 | A=0.576 | G=0.424 |
The Genome Aggregation Database | American | Sub | 832 | A=0.540 | G=0.460 |
The Genome Aggregation Database | East Asian | Sub | 1620 | A=0.038 | G=0.962 |
The Genome Aggregation Database | Europe | Sub | 18452 | A=0.574 | G=0.425 |
The Genome Aggregation Database | Global | Study-wide | 29888 | A=0.543 | G=0.456 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.470 | G=0.530 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.566 | G=0.433 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.588 | G=0.412 |
PMID | Title | Author | Journal |
---|---|---|---|
23691058 | Dosage transmission disequilibrium test (dTDT) for linkage and association detection. | Zhang Z | PLoS One |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1035717 | 6.36E-06 | alcohol dependence | 23691058 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr14 | 70561327 | 70561548 | E067 | -17151 |
chr14 | 70561591 | 70561760 | E067 | -16939 |
chr14 | 70561766 | 70561850 | E067 | -16849 |
chr14 | 70564457 | 70564575 | E067 | -14124 |
chr14 | 70564606 | 70564658 | E067 | -14041 |
chr14 | 70564726 | 70564883 | E067 | -13816 |
chr14 | 70574585 | 70574662 | E067 | -4037 |
chr14 | 70574769 | 70574839 | E067 | -3860 |
chr14 | 70575202 | 70575403 | E067 | -3296 |
chr14 | 70575597 | 70575657 | E067 | -3042 |
chr14 | 70587931 | 70588645 | E067 | 9232 |
chr14 | 70588767 | 70588817 | E067 | 10068 |
chr14 | 70588916 | 70588966 | E067 | 10217 |
chr14 | 70564007 | 70564246 | E068 | -14453 |
chr14 | 70564457 | 70564575 | E068 | -14124 |
chr14 | 70564726 | 70564883 | E068 | -13816 |
chr14 | 70564912 | 70565452 | E068 | -13247 |
chr14 | 70565482 | 70565537 | E068 | -13162 |
chr14 | 70565714 | 70565779 | E068 | -12920 |
chr14 | 70566305 | 70566380 | E068 | -12319 |
chr14 | 70615590 | 70615934 | E068 | 36891 |
chr14 | 70616052 | 70616191 | E068 | 37353 |
chr14 | 70616308 | 70616385 | E068 | 37609 |
chr14 | 70616394 | 70616442 | E068 | 37695 |
chr14 | 70556281 | 70556357 | E069 | -22342 |
chr14 | 70556427 | 70556488 | E069 | -22211 |
chr14 | 70563690 | 70563873 | E069 | -14826 |
chr14 | 70564007 | 70564246 | E069 | -14453 |
chr14 | 70564457 | 70564575 | E069 | -14124 |
chr14 | 70564606 | 70564658 | E069 | -14041 |
chr14 | 70564726 | 70564883 | E069 | -13816 |
chr14 | 70564912 | 70565452 | E069 | -13247 |
chr14 | 70565482 | 70565537 | E069 | -13162 |
chr14 | 70565714 | 70565779 | E069 | -12920 |
chr14 | 70574172 | 70574235 | E069 | -4464 |
chr14 | 70574585 | 70574662 | E069 | -4037 |
chr14 | 70574769 | 70574839 | E069 | -3860 |
chr14 | 70575202 | 70575403 | E069 | -3296 |
chr14 | 70575597 | 70575657 | E069 | -3042 |
chr14 | 70556281 | 70556357 | E070 | -22342 |
chr14 | 70556427 | 70556488 | E070 | -22211 |
chr14 | 70564457 | 70564575 | E070 | -14124 |
chr14 | 70564606 | 70564658 | E070 | -14041 |
chr14 | 70564726 | 70564883 | E070 | -13816 |
chr14 | 70564912 | 70565452 | E070 | -13247 |
chr14 | 70565482 | 70565537 | E070 | -13162 |
chr14 | 70574172 | 70574235 | E070 | -4464 |
chr14 | 70574585 | 70574662 | E070 | -4037 |
chr14 | 70574769 | 70574839 | E070 | -3860 |
chr14 | 70563690 | 70563873 | E071 | -14826 |
chr14 | 70564007 | 70564246 | E071 | -14453 |
chr14 | 70564457 | 70564575 | E071 | -14124 |
chr14 | 70564606 | 70564658 | E071 | -14041 |
chr14 | 70564726 | 70564883 | E071 | -13816 |
chr14 | 70564912 | 70565452 | E071 | -13247 |
chr14 | 70574585 | 70574662 | E071 | -4037 |
chr14 | 70574769 | 70574839 | E071 | -3860 |
chr14 | 70575202 | 70575403 | E071 | -3296 |
chr14 | 70575597 | 70575657 | E071 | -3042 |
chr14 | 70588767 | 70588817 | E071 | 10068 |
chr14 | 70588916 | 70588966 | E071 | 10217 |
chr14 | 70556281 | 70556357 | E072 | -22342 |
chr14 | 70556427 | 70556488 | E072 | -22211 |
chr14 | 70574769 | 70574839 | E072 | -3860 |
chr14 | 70575202 | 70575403 | E072 | -3296 |
chr14 | 70586569 | 70586726 | E072 | 7870 |
chr14 | 70586745 | 70586871 | E072 | 8046 |
chr14 | 70586932 | 70587021 | E072 | 8233 |
chr14 | 70587040 | 70587182 | E072 | 8341 |
chr14 | 70563690 | 70563873 | E073 | -14826 |
chr14 | 70564007 | 70564246 | E073 | -14453 |
chr14 | 70564457 | 70564575 | E073 | -14124 |
chr14 | 70564606 | 70564658 | E073 | -14041 |
chr14 | 70564726 | 70564883 | E073 | -13816 |
chr14 | 70564912 | 70565452 | E073 | -13247 |
chr14 | 70565482 | 70565537 | E073 | -13162 |
chr14 | 70565714 | 70565779 | E073 | -12920 |
chr14 | 70597241 | 70597291 | E073 | 18542 |
chr14 | 70597361 | 70597401 | E073 | 18662 |
chr14 | 70556281 | 70556357 | E074 | -22342 |
chr14 | 70556427 | 70556488 | E074 | -22211 |
chr14 | 70564457 | 70564575 | E074 | -14124 |
chr14 | 70564606 | 70564658 | E074 | -14041 |
chr14 | 70564726 | 70564883 | E074 | -13816 |
chr14 | 70564912 | 70565452 | E074 | -13247 |
chr14 | 70530873 | 70531210 | E081 | -47489 |
chr14 | 70531350 | 70531438 | E081 | -47261 |
chr14 | 70531590 | 70531641 | E081 | -47058 |
chr14 | 70545287 | 70545344 | E081 | -33355 |
chr14 | 70546312 | 70546352 | E081 | -32347 |
chr14 | 70546692 | 70547239 | E081 | -31460 |
chr14 | 70547579 | 70547674 | E081 | -31025 |
chr14 | 70561327 | 70561548 | E081 | -17151 |
chr14 | 70561591 | 70561760 | E081 | -16939 |
chr14 | 70561766 | 70561850 | E081 | -16849 |
chr14 | 70562109 | 70562195 | E081 | -16504 |
chr14 | 70563690 | 70563873 | E081 | -14826 |
chr14 | 70564007 | 70564246 | E081 | -14453 |
chr14 | 70564912 | 70565452 | E081 | -13247 |
chr14 | 70565482 | 70565537 | E081 | -13162 |
chr14 | 70565714 | 70565779 | E081 | -12920 |
chr14 | 70566305 | 70566380 | E081 | -12319 |
chr14 | 70574769 | 70574839 | E081 | -3860 |
chr14 | 70575202 | 70575403 | E081 | -3296 |
chr14 | 70575597 | 70575657 | E081 | -3042 |
chr14 | 70583008 | 70583096 | E081 | 4309 |
chr14 | 70583483 | 70583719 | E081 | 4784 |
chr14 | 70587931 | 70588645 | E081 | 9232 |
chr14 | 70588767 | 70588817 | E081 | 10068 |
chr14 | 70588916 | 70588966 | E081 | 10217 |
chr14 | 70589050 | 70589234 | E081 | 10351 |
chr14 | 70546312 | 70546352 | E082 | -32347 |
chr14 | 70563690 | 70563873 | E082 | -14826 |
chr14 | 70564007 | 70564246 | E082 | -14453 |
chr14 | 70564457 | 70564575 | E082 | -14124 |
chr14 | 70564606 | 70564658 | E082 | -14041 |
chr14 | 70564726 | 70564883 | E082 | -13816 |
chr14 | 70564912 | 70565452 | E082 | -13247 |
chr14 | 70565482 | 70565537 | E082 | -13162 |
chr14 | 70565714 | 70565779 | E082 | -12920 |
chr14 | 70583483 | 70583719 | E082 | 4784 |
chr14 | 70587931 | 70588645 | E082 | 9232 |
chr14 | 70588767 | 70588817 | E082 | 10068 |
chr14 | 70588916 | 70588966 | E082 | 10217 |
chr14 | 70597241 | 70597291 | E082 | 18542 |
chr14 | 70597361 | 70597401 | E082 | 18662 |