SNP Detail Info-rs1035961

Organism: Homo sapiens

Alleles: A>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0061 (1836/29952,GnomAD)
C=0059 (1732/29118,TOPMED)
C=0132 (662/5008,1000G)
C=0068 (262/3854,ALSPAC)
C=0070 (258/3708,TWINSUK)

Position: chr5:9928750 (GRCh38.p7) (5p15.2)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.9928750A>C
GRCh37.p13 chr 5	NC_000005.9:g.9928862A>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.979	C=0.021
1000Genomes	American	Sub	694	A=0.860	C=0.140
1000Genomes	East Asian	Sub	1008	A=0.781	C=0.219
1000Genomes	Europe	Sub	1006	A=0.945	C=0.055
1000Genomes	Global	Study-wide	5008	A=0.868	C=0.132
1000Genomes	South Asian	Sub	978	A=0.740	C=0.260
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.932	C=0.068
The Genome Aggregation Database	African	Sub	8718	A=0.967	C=0.033
The Genome Aggregation Database	American	Sub	838	A=0.850	C=0.150
The Genome Aggregation Database	East Asian	Sub	1604	A=0.809	C=0.191
The Genome Aggregation Database	Europe	Sub	18490	A=0.940	C=0.059
The Genome Aggregation Database	Global	Study-wide	29952	A=0.938	C=0.061
The Genome Aggregation Database	Other	Sub	302	A=0.910	C=0.090
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.940	C=0.059
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.930	C=0.070

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs1035961	1.8E-06	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1035961