SNP Detail Info-rs1036360

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0314 (9413/29908,GnomAD)
G=0341 (9954/29118,TOPMED)
G=0418 (2091/5008,1000G)
G=0306 (1178/3854,ALSPAC)
G=0303 (1125/3708,TWINSUK)

Position: chr12:94059553 (GRCh38.p7) (12q22)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 27 Enhancers around

Promoter: 9 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 12	NC_000012.12:g.94059553A>G
GRCh37.p13 chr 12	NC_000012.11:g.94453329A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.672	G=0.328
1000Genomes	American	Sub	694	A=0.600	G=0.400
1000Genomes	East Asian	Sub	1008	A=0.462	G=0.538
1000Genomes	Europe	Sub	1006	A=0.706	G=0.294
1000Genomes	Global	Study-wide	5008	A=0.582	G=0.418
1000Genomes	South Asian	Sub	978	A=0.440	G=0.560
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.694	G=0.306
The Genome Aggregation Database	African	Sub	8692	A=0.656	G=0.344
The Genome Aggregation Database	American	Sub	832	A=0.580	G=0.420
The Genome Aggregation Database	East Asian	Sub	1618	A=0.470	G=0.530
The Genome Aggregation Database	Europe	Sub	18464	A=0.723	G=0.276
The Genome Aggregation Database	Global	Study-wide	29908	A=0.685	G=0.314
The Genome Aggregation Database	Other	Sub	302	A=0.640	G=0.360
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.658	G=0.341
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.697	G=0.303

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs1036360	7.32E-06	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr12	94468191	94469658	E068	14862
chr12	94435554	94435604	E070	-17725
chr12	94435605	94435679	E070	-17650
chr12	94435715	94436439	E070	-16890
chr12	94474047	94474687	E070	20718
chr12	94475101	94475327	E070	21772
chr12	94475415	94475475	E070	22086
chr12	94475484	94475551	E070	22155
chr12	94475593	94475648	E070	22264
chr12	94475795	94475849	E070	22466
chr12	94476095	94476180	E070	22766
chr12	94476184	94476287	E070	22855
chr12	94476385	94476435	E070	23056
chr12	94476517	94476695	E070	23188
chr12	94502086	94502206	E070	48757
chr12	94502459	94502648	E070	49130
chr12	94468054	94468134	E074	14725
chr12	94435554	94435604	E081	-17725
chr12	94435605	94435679	E081	-17650
chr12	94435715	94436439	E081	-16890
chr12	94435554	94435604	E082	-17725
chr12	94435605	94435679	E082	-17650
chr12	94435715	94436439	E082	-16890
chr12	94467247	94467685	E082	13918
chr12	94467826	94467876	E082	14497
chr12	94468054	94468134	E082	14725
chr12	94475593	94475648	E082	22264

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr12	94494877	94496762	E067	41548
chr12	94494877	94496762	E068	41548
chr12	94494877	94496762	E069	41548
chr12	94494877	94496762	E070	41548
chr12	94494877	94496762	E071	41548
chr12	94494877	94496762	E072	41548
chr12	94494877	94496762	E073	41548
chr12	94494877	94496762	E074	41548
chr12	94494877	94496762	E082	41548

rs1036360