rs1037260

Homo sapiens
G>T
None
Check p-value
SNV (Single Nucleotide Variation)
G==0119 (3584/29918,GnomAD)
G==0152 (4433/29118,TOPMED)
G==0150 (750/5008,1000G)
G==0041 (158/3854,ALSPAC)
G==0043 (158/3708,TWINSUK)
chr17:73161126 (GRCh38.p7) (17q25.1)
AD
GWASdb2
2   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 17NC_000017.11:g.73161126G>T
GRCh37.p13 chr 17NC_000017.10:g.71157265G>T
SSTR2 RefSeqGeneNG_029371.1:g.1106G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.331T=0.669
1000GenomesAmericanSub694G=0.130T=0.870
1000GenomesEast AsianSub1008G=0.119T=0.881
1000GenomesEuropeSub1006G=0.052T=0.948
1000GenomesGlobalStudy-wide5008G=0.150T=0.850
1000GenomesSouth AsianSub978G=0.050T=0.950
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.041T=0.959
The Genome Aggregation DatabaseAfricanSub8684G=0.278T=0.722
The Genome Aggregation DatabaseAmericanSub836G=0.120T=0.880
The Genome Aggregation DatabaseEast AsianSub1616G=0.130T=0.870
The Genome Aggregation DatabaseEuropeSub18480G=0.045T=0.954
The Genome Aggregation DatabaseGlobalStudy-wide29918G=0.119T=0.880
The Genome Aggregation DatabaseOtherSub302G=0.050T=0.950
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.152T=0.847
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.043T=0.957
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res
19324939Association of SSTR2 polymorphisms and glucose homeostasis phenotypes: the Insulin Resistance Atherosclerosis Family Study.Sutton BSDiabetes

P-Value

SNP ID p-value Traits Study
rs10372600.000065alcoholismpha002892
rs10372600.000065alcohol dependence20201924

eQTL of rs1037260 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1037260 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr177119087171190911E06733606
chr177119104971191281E06733784
chr177115134371152977E068-4288
chr177119087171190911E06833606
chr177115134371152977E069-4288
chr177115986371159948E0692598
chr177119087171190911E06933606
chr177119104971191281E06933784
chr177119311971193314E06935854
chr177119336571193586E06936100
chr177114298371143149E070-14116
chr177114319771143247E070-14018
chr177115116771151221E070-6044
chr177115134371152977E070-4288
chr177115302671154027E070-3238
chr177115418071154292E070-2973
chr177115116771151221E071-6044
chr177115134371152977E071-4288
chr177115746371157866E071198
chr177119087171190911E07133606
chr177119252171193095E07135256
chr177119311971193314E07135854
chr177115134371152977E072-4288
chr177119205671192157E07234791
chr177115134371152977E073-4288
chr177116543771165497E0738172
chr177116566071165724E0738395
chr177117880771179402E07321542
chr177119205671192157E07334791
chr177115134371152977E074-4288
chr177116601171166071E0748746
chr177115025071150304E081-6961
chr177115053171150617E081-6648
chr177115069971150753E081-6512
chr177115077471150934E081-6331
chr177115116771151221E081-6044
chr177115134371152977E081-4288
chr177115302671154027E081-3238
chr177115418071154292E081-2973
chr177115431371154435E081-2830
chr177115447871154528E081-2737
chr177115457871154641E081-2624
chr177116601171166071E0818746
chr177116615371166230E0818888
chr177117315571173207E08115890
chr177117364071173775E08116375
chr177119087171190911E08133606
chr177119104971191281E08133784
chr177119240571192507E08135140
chr177111439471114459E082-42806
chr177111447371114547E082-42718
chr177111457871114721E082-42544
chr177111487771114971E082-42294
chr177111506471115313E082-41952
chr177111538271115525E082-41740
chr177115025071150304E082-6961
chr177115053171150617E082-6648
chr177115069971150753E082-6512
chr177115077471150934E082-6331
chr177115116771151221E082-6044
chr177115134371152977E082-4288
chr177115302671154027E082-3238
chr177115457871154641E082-2624
chr177115468971154747E082-2518
chr177117404071174092E08216775
chr177117429371174374E08217028
chr177117880771179402E08221542
chr177117943371179499E08222168










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr177116037571162561E0673110
chr177118749871189018E06730233
chr177118904271190053E06731777
chr177116037571162561E0683110
chr177118749871189018E06830233
chr177118904271190053E06831777
chr177118749871189018E06930233
chr177118904271190053E06931777
chr177118749871189018E07030233
chr177118904271190053E07031777
chr177116037571162561E0713110
chr177118749871189018E07130233
chr177118904271190053E07131777
chr177116037571162561E0723110
chr177118749871189018E07230233
chr177118904271190053E07231777
chr177116037571162561E0733110
chr177118749871189018E07330233
chr177118904271190053E07331777
chr177116037571162561E0743110
chr177118749871189018E07430233
chr177118904271190053E07431777
chr177118749871189018E08130233
chr177118904271190053E08131777
chr177116037571162561E0823110
chr177118749871189018E08230233
chr177118904271190053E08231777