Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 17 | NC_000017.11:g.73161126G>T |
GRCh37.p13 chr 17 | NC_000017.10:g.71157265G>T |
SSTR2 RefSeqGene | NG_029371.1:g.1106G>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.331 | T=0.669 |
1000Genomes | American | Sub | 694 | G=0.130 | T=0.870 |
1000Genomes | East Asian | Sub | 1008 | G=0.119 | T=0.881 |
1000Genomes | Europe | Sub | 1006 | G=0.052 | T=0.948 |
1000Genomes | Global | Study-wide | 5008 | G=0.150 | T=0.850 |
1000Genomes | South Asian | Sub | 978 | G=0.050 | T=0.950 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.041 | T=0.959 |
The Genome Aggregation Database | African | Sub | 8684 | G=0.278 | T=0.722 |
The Genome Aggregation Database | American | Sub | 836 | G=0.120 | T=0.880 |
The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.130 | T=0.870 |
The Genome Aggregation Database | Europe | Sub | 18480 | G=0.045 | T=0.954 |
The Genome Aggregation Database | Global | Study-wide | 29918 | G=0.119 | T=0.880 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.050 | T=0.950 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.152 | T=0.847 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.043 | T=0.957 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
19324939 | Association of SSTR2 polymorphisms and glucose homeostasis phenotypes: the Insulin Resistance Atherosclerosis Family Study. | Sutton BS | Diabetes |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1037260 | 0.000065 | alcoholism | pha002892 |
rs1037260 | 0.000065 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr17 | 71190871 | 71190911 | E067 | 33606 |
chr17 | 71191049 | 71191281 | E067 | 33784 |
chr17 | 71151343 | 71152977 | E068 | -4288 |
chr17 | 71190871 | 71190911 | E068 | 33606 |
chr17 | 71151343 | 71152977 | E069 | -4288 |
chr17 | 71159863 | 71159948 | E069 | 2598 |
chr17 | 71190871 | 71190911 | E069 | 33606 |
chr17 | 71191049 | 71191281 | E069 | 33784 |
chr17 | 71193119 | 71193314 | E069 | 35854 |
chr17 | 71193365 | 71193586 | E069 | 36100 |
chr17 | 71142983 | 71143149 | E070 | -14116 |
chr17 | 71143197 | 71143247 | E070 | -14018 |
chr17 | 71151167 | 71151221 | E070 | -6044 |
chr17 | 71151343 | 71152977 | E070 | -4288 |
chr17 | 71153026 | 71154027 | E070 | -3238 |
chr17 | 71154180 | 71154292 | E070 | -2973 |
chr17 | 71151167 | 71151221 | E071 | -6044 |
chr17 | 71151343 | 71152977 | E071 | -4288 |
chr17 | 71157463 | 71157866 | E071 | 198 |
chr17 | 71190871 | 71190911 | E071 | 33606 |
chr17 | 71192521 | 71193095 | E071 | 35256 |
chr17 | 71193119 | 71193314 | E071 | 35854 |
chr17 | 71151343 | 71152977 | E072 | -4288 |
chr17 | 71192056 | 71192157 | E072 | 34791 |
chr17 | 71151343 | 71152977 | E073 | -4288 |
chr17 | 71165437 | 71165497 | E073 | 8172 |
chr17 | 71165660 | 71165724 | E073 | 8395 |
chr17 | 71178807 | 71179402 | E073 | 21542 |
chr17 | 71192056 | 71192157 | E073 | 34791 |
chr17 | 71151343 | 71152977 | E074 | -4288 |
chr17 | 71166011 | 71166071 | E074 | 8746 |
chr17 | 71150250 | 71150304 | E081 | -6961 |
chr17 | 71150531 | 71150617 | E081 | -6648 |
chr17 | 71150699 | 71150753 | E081 | -6512 |
chr17 | 71150774 | 71150934 | E081 | -6331 |
chr17 | 71151167 | 71151221 | E081 | -6044 |
chr17 | 71151343 | 71152977 | E081 | -4288 |
chr17 | 71153026 | 71154027 | E081 | -3238 |
chr17 | 71154180 | 71154292 | E081 | -2973 |
chr17 | 71154313 | 71154435 | E081 | -2830 |
chr17 | 71154478 | 71154528 | E081 | -2737 |
chr17 | 71154578 | 71154641 | E081 | -2624 |
chr17 | 71166011 | 71166071 | E081 | 8746 |
chr17 | 71166153 | 71166230 | E081 | 8888 |
chr17 | 71173155 | 71173207 | E081 | 15890 |
chr17 | 71173640 | 71173775 | E081 | 16375 |
chr17 | 71190871 | 71190911 | E081 | 33606 |
chr17 | 71191049 | 71191281 | E081 | 33784 |
chr17 | 71192405 | 71192507 | E081 | 35140 |
chr17 | 71114394 | 71114459 | E082 | -42806 |
chr17 | 71114473 | 71114547 | E082 | -42718 |
chr17 | 71114578 | 71114721 | E082 | -42544 |
chr17 | 71114877 | 71114971 | E082 | -42294 |
chr17 | 71115064 | 71115313 | E082 | -41952 |
chr17 | 71115382 | 71115525 | E082 | -41740 |
chr17 | 71150250 | 71150304 | E082 | -6961 |
chr17 | 71150531 | 71150617 | E082 | -6648 |
chr17 | 71150699 | 71150753 | E082 | -6512 |
chr17 | 71150774 | 71150934 | E082 | -6331 |
chr17 | 71151167 | 71151221 | E082 | -6044 |
chr17 | 71151343 | 71152977 | E082 | -4288 |
chr17 | 71153026 | 71154027 | E082 | -3238 |
chr17 | 71154578 | 71154641 | E082 | -2624 |
chr17 | 71154689 | 71154747 | E082 | -2518 |
chr17 | 71174040 | 71174092 | E082 | 16775 |
chr17 | 71174293 | 71174374 | E082 | 17028 |
chr17 | 71178807 | 71179402 | E082 | 21542 |
chr17 | 71179433 | 71179499 | E082 | 22168 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr17 | 71160375 | 71162561 | E067 | 3110 |
chr17 | 71187498 | 71189018 | E067 | 30233 |
chr17 | 71189042 | 71190053 | E067 | 31777 |
chr17 | 71160375 | 71162561 | E068 | 3110 |
chr17 | 71187498 | 71189018 | E068 | 30233 |
chr17 | 71189042 | 71190053 | E068 | 31777 |
chr17 | 71187498 | 71189018 | E069 | 30233 |
chr17 | 71189042 | 71190053 | E069 | 31777 |
chr17 | 71187498 | 71189018 | E070 | 30233 |
chr17 | 71189042 | 71190053 | E070 | 31777 |
chr17 | 71160375 | 71162561 | E071 | 3110 |
chr17 | 71187498 | 71189018 | E071 | 30233 |
chr17 | 71189042 | 71190053 | E071 | 31777 |
chr17 | 71160375 | 71162561 | E072 | 3110 |
chr17 | 71187498 | 71189018 | E072 | 30233 |
chr17 | 71189042 | 71190053 | E072 | 31777 |
chr17 | 71160375 | 71162561 | E073 | 3110 |
chr17 | 71187498 | 71189018 | E073 | 30233 |
chr17 | 71189042 | 71190053 | E073 | 31777 |
chr17 | 71160375 | 71162561 | E074 | 3110 |
chr17 | 71187498 | 71189018 | E074 | 30233 |
chr17 | 71189042 | 71190053 | E074 | 31777 |
chr17 | 71187498 | 71189018 | E081 | 30233 |
chr17 | 71189042 | 71190053 | E081 | 31777 |
chr17 | 71160375 | 71162561 | E082 | 3110 |
chr17 | 71187498 | 71189018 | E082 | 30233 |
chr17 | 71189042 | 71190053 | E082 | 31777 |