rs1037306

Homo sapiens
T>C
ZFPM2 : Intron Variant
LOC105375696 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0220 (6586/29912,GnomAD)
C=0243 (7097/29118,TOPMED)
C=0232 (1160/5008,1000G)
C=0170 (657/3854,ALSPAC)
C=0179 (665/3708,TWINSUK)
chr8:105549049 (GRCh38.p7) (8q23.1)
ND
GWASdb2
1   publication(s)
See rs on genome
24 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.105549049T>C
GRCh37.p13 chr 8NC_000008.10:g.106561277T>C
ZFPM2 RefSeqGeneNG_011723.1:g.235131T>C

Gene: ZFPM2, zinc finger protein, FOG family member 2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZFPM2 transcript variant 1NM_012082.3:c.N/AIntron Variant
ZFPM2 transcript variant X1XM_011516947.2:c.N/AIntron Variant
ZFPM2 transcript variant X2XM_011516948.2:c.N/AIntron Variant

Gene: LOC105375696, uncharacterized LOC105375696(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105375696 transcript variant X1XR_001745682.1:n.N/AIntron Variant
LOC105375696 transcript variant X2XR_001745683.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.679C=0.321
1000GenomesAmericanSub694T=0.790C=0.210
1000GenomesEast AsianSub1008T=0.839C=0.161
1000GenomesEuropeSub1006T=0.808C=0.192
1000GenomesGlobalStudy-wide5008T=0.768C=0.232
1000GenomesSouth AsianSub978T=0.760C=0.240
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.830C=0.170
The Genome Aggregation DatabaseAfricanSub8710T=0.697C=0.303
The Genome Aggregation DatabaseAmericanSub838T=0.780C=0.220
The Genome Aggregation DatabaseEast AsianSub1606T=0.863C=0.137
The Genome Aggregation DatabaseEuropeSub18456T=0.810C=0.189
The Genome Aggregation DatabaseGlobalStudy-wide29912T=0.779C=0.220
The Genome Aggregation DatabaseOtherSub302T=0.890C=0.110
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.756C=0.243
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.821C=0.179
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs10373060.000421nicotine smoking19268276

eQTL of rs1037306 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1037306 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr8106529982106530970E067-30307
chr8106604568106605464E06743291
chr8106605573106605737E06744296
chr8106529982106530970E068-30307
chr8106604292106604476E06843015
chr8106609980106610566E06848703
chr8106610577106610627E06849300
chr8106529982106530970E069-30307
chr8106586936106587038E06925659
chr8106594254106594362E07032977
chr8106529982106530970E071-30307
chr8106536614106536716E071-24561
chr8106537448106537544E071-23733
chr8106537565106537661E071-23616
chr8106591654106591994E07130377
chr8106529982106530970E072-30307
chr8106537448106537544E073-23733
chr8106610577106610627E07349300
chr8106610692106610962E07349415
chr8106607215106607265E07445938
chr8106607407106607481E07446130
chr8106536614106536716E081-24561
chr8106536736106537283E081-23994
chr8106589455106589499E08128178