SNP Detail Info-rs10412487

Sequence Name	Change(s)
GRCh38.p7 chr 19	NC_000019.10:g.8862541T>C
GRCh37.p13 chr 19	NC_000019.9:g.8973217T>C

Molecule type	Change	Amino acid[Codon]	SO Term
MUC16 transcript	NM_024690.2:c.	N/A	Intron Variant
MUC16 transcript variant X1	XM_017027486.1:c.	N/A	Intron Variant
MUC16 transcript variant X2	XM_017027487.1:c.	N/A	Intron Variant
MUC16 transcript variant X3	XM_017027488.1:c.	N/A	Intron Variant
MUC16 transcript variant X4	XM_017027489.1:c.	N/A	Intron Variant
MUC16 transcript variant X5	XM_017027490.1:c.	N/A	Intron Variant
MUC16 transcript variant X6	XM_017027491.1:c.	N/A	Intron Variant
MUC16 transcript variant X7	XM_017027492.1:c.	N/A	Intron Variant
MUC16 transcript variant X8	XM_017027493.1:c.	N/A	Intron Variant
MUC16 transcript variant X9	XM_017027494.1:c.	N/A	Intron Variant
MUC16 transcript variant X10	XM_017027495.1:c.	N/A	Intron Variant
MUC16 transcript variant X11	XM_017027496.1:c.	N/A	Intron Variant
MUC16 transcript variant X12	XM_017027497.1:c.	N/A	Intron Variant
MUC16 transcript variant X11	XM_017027499.1:c.	N/A	Intron Variant
MUC16 transcript variant X12	XM_017027500.1:c.	N/A	Intron Variant
MUC16 transcript variant X13	XM_017027501.1:c.	N/A	Intron Variant
MUC16 transcript variant X13	XM_017027498.1:c.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.927	C=0.073
1000Genomes	American	Sub	694	T=0.650	C=0.350
1000Genomes	East Asian	Sub	1008	T=0.746	C=0.254
1000Genomes	Europe	Sub	1006	T=0.626	C=0.374
1000Genomes	Global	Study-wide	5008	T=0.755	C=0.245
1000Genomes	South Asian	Sub	978	T=0.740	C=0.260
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.626	C=0.374
The Genome Aggregation Database	African	Sub	8716	T=0.882	C=0.118
The Genome Aggregation Database	American	Sub	834	T=0.620	C=0.380
The Genome Aggregation Database	East Asian	Sub	1618	T=0.727	C=0.273
The Genome Aggregation Database	Europe	Sub	18466	T=0.626	C=0.373
The Genome Aggregation Database	Global	Study-wide	29936	T=0.706	C=0.293
The Genome Aggregation Database	Other	Sub	302	T=0.720	C=0.280
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.759	C=0.240
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.624	C=0.376

PMID	Title	Author	Journal
19581569	Genome-wide association study of alcohol dependence.	Treutlein J	Arch Gen Psychiatry

SNP ID	p-value	Traits	Study
rs10412487	5.81E-05	alcohol dependence	19581569

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr19	8941774	8941826	E070	-31391
chr19	8941871	8941924	E070	-31293
chr19	8941774	8941826	E071	-31391
chr19	8941871	8941924	E071	-31293
chr19	8941774	8941826	E073	-31391
chr19	8941871	8941924	E073	-31293

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr19	8942118	8944115	E067	-29102
chr19	8942118	8944115	E068	-29102
chr19	8942118	8944115	E069	-29102
chr19	8944145	8944311	E069	-28906
chr19	8942118	8944115	E070	-29102
chr19	8942118	8944115	E071	-29102
chr19	8944145	8944311	E071	-28906
chr19	8942118	8944115	E072	-29102
chr19	8942118	8944115	E073	-29102
chr19	8942118	8944115	E074	-29102
chr19	8999387	8999437	E074	26170
chr19	8999476	8999549	E074	26259
chr19	8999878	8999941	E074	26661
chr19	9006381	9006431	E074	33164
chr19	9006539	9006622	E074	33322
chr19	9008104	9008154	E074	34887
chr19	9012729	9012798	E074	39512
chr19	9015532	9015613	E074	42315
chr19	8942118	8944115	E082	-29102
chr19	8944145	8944311	E082	-28906

rs10412487