SNP Detail Info-rs10433463

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

LINC01324 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0133 (3994/29960,GnomAD)
A=0168 (4919/29118,TOPMED)
A=0142 (711/5008,1000G)
A=0104 (399/3854,ALSPAC)
A=0106 (392/3708,TWINSUK)

Position: chr3:164822861 (GRCh38.p7) (3q26.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.164822861G>A
GRCh37.p13 chr 3	NC_000003.11:g.164540649G>A

Molecule type	Change	Amino acid[Codon]	SO Term
LINC01324 transcript	NR_126405.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.745	A=0.255
1000Genomes	American	Sub	694	G=0.920	A=0.080
1000Genomes	East Asian	Sub	1008	G=0.905	A=0.095
1000Genomes	Europe	Sub	1006	G=0.907	A=0.093
1000Genomes	Global	Study-wide	5008	G=0.858	A=0.142
1000Genomes	South Asian	Sub	978	G=0.870	A=0.130
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.896	A=0.104
The Genome Aggregation Database	African	Sub	8718	G=0.757	A=0.243
The Genome Aggregation Database	American	Sub	838	G=0.940	A=0.060
The Genome Aggregation Database	East Asian	Sub	1618	G=0.898	A=0.102
The Genome Aggregation Database	Europe	Sub	18484	G=0.911	A=0.088
The Genome Aggregation Database	Global	Study-wide	29960	G=0.866	A=0.133
The Genome Aggregation Database	Other	Sub	302	G=0.910	A=0.090
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.831	A=0.168
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.894	A=0.106

PMID	Title	Author	Journal
24962325	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Kapoor M	Drug Alcohol Depend

SNP ID	p-value	Traits	Study
rs10433463	6.06E-08	alcohol dependence (age at onset)	24962325

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs10433463