rs10441779

Homo sapiens
C>A / C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0199 (5963/29950,GnomAD)
T=0187 (5454/29118,TOPMED)
T=0135 (674/5008,1000G)
T=0242 (931/3854,ALSPAC)
T=0242 (896/3708,TWINSUK)
chr9:89263787 (GRCh38.p7) (9q22.2)
AD
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.89263787C>A
GRCh38.p7 chr 9NC_000009.12:g.89263787C>T
GRCh37.p13 chr 9NC_000009.11:g.91878702C>A
GRCh37.p13 chr 9NC_000009.11:g.91878702C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.868T=0.132
1000GenomesAmericanSub694C=0.870T=0.130
1000GenomesEast AsianSub1008C=0.993T=0.007
1000GenomesEuropeSub1006C=0.772T=0.228
1000GenomesGlobalStudy-wide5008C=0.865T=0.135
1000GenomesSouth AsianSub978C=0.820T=0.180
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.758T=0.242
The Genome Aggregation DatabaseAfricanSub8730C=0.862T=0.138
The Genome Aggregation DatabaseAmericanSub838C=0.880T=0.12,
The Genome Aggregation DatabaseEast AsianSub1622C=0.987T=0.012
The Genome Aggregation DatabaseEuropeSub18458C=0.752T=0.247
The Genome Aggregation DatabaseGlobalStudy-wide29950C=0.800T=0.199
The Genome Aggregation DatabaseOtherSub302C=0.780T=0.22,
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.812T=0.187
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.758T=0.242
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs104417790.00029alcohol dependence(early age of onset)20201924
rs104417790.00036alcohol dependence20201924

eQTL of rs10441779 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10441779 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9118275180118275266E06820192
chr9118275180118275266E06920192
chr9118275321118275386E06920333
chr9118275503118275680E06920515
chr9118206387118208414E070-46574
chr9118275180118275266E07120192
chr9118275321118275386E07120333
chr9118275503118275680E07120515
chr9118275180118275266E07420192
chr9118275321118275386E07420333
chr9118275503118275680E07420515
chr9118276306118276356E07421318
chr9118276406118276552E07421418