SNP Detail Info-rs10469016

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

DCC : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0171 (5144/29924,GnomAD)
A=0192 (5604/29118,TOPMED)
A=0146 (731/5008,1000G)
A=0177 (684/3854,ALSPAC)
A=0172 (639/3708,TWINSUK)

Position: chr18:52800515 (GRCh38.p7) (18q21.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Molecule type	Change	Amino acid[Codon]	SO Term
DCC transcript	NM_005215.3:c.	N/A	Intron Variant
DCC transcript variant X2	XM_011525843.1:c.	N/A	Intron Variant
DCC transcript variant X1	XM_017025568.1:c.	N/A	Intron Variant
DCC transcript variant X3	XM_017025569.1:c.	N/A	Intron Variant
DCC transcript variant X5	XM_011525844.2:c.	N/A	Genic Upstream Transcript Variant
DCC transcript variant X4	XM_017025570.1:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.785	A=0.215
1000Genomes	American	Sub	694	G=0.870	A=0.130
1000Genomes	East Asian	Sub	1008	G=0.925	A=0.075
1000Genomes	Europe	Sub	1006	G=0.829	A=0.171
1000Genomes	Global	Study-wide	5008	G=0.854	A=0.146
1000Genomes	South Asian	Sub	978	G=0.890	A=0.110
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.823	A=0.177
The Genome Aggregation Database	African	Sub	8704	G=0.797	A=0.203
The Genome Aggregation Database	American	Sub	838	G=0.870	A=0.130
The Genome Aggregation Database	East Asian	Sub	1612	G=0.910	A=0.090
The Genome Aggregation Database	Europe	Sub	18468	G=0.833	A=0.166
The Genome Aggregation Database	Global	Study-wide	29924	G=0.828	A=0.171
The Genome Aggregation Database	Other	Sub	302	G=0.850	A=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.807	A=0.192
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.828	A=0.172

PMID	Title	Author	Journal
21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Heath AC	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs10469016	2.7E-05	alcoholism (heaviness of drinking)	21529783

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs10469016