SNP Detail Info-rs10484210

Organism: Homo sapiens

Alleles: A>C / A>G

Gene : Feature

LOC101928721 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0146 (4370/29930,GnomAD)
G=0115 (574/5008,1000G)
G=0195 (750/3854,ALSPAC)
G=0202 (748/3708,TWINSUK)

Position: chr4:37074374 (GRCh38.p7) (4p14)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 10 Enhancers around

Promoter: 0 Promoter around

Molecule type	Change	Amino acid[Codon]	SO Term
LOC101928721 transcript variant X4	XR_001741658.1:n.	N/A	Intron Variant
LOC101928721 transcript variant X3	XR_244605.4:n.	N/A	Intron Variant
LOC101928721 transcript variant X1	XR_427511.3:n.	N/A	Intron Variant
LOC101928721 transcript variant X9	XR_427512.3:n.	N/A	Intron Variant
LOC101928721 transcript variant X2	XR_925199.2:n.	N/A	Intron Variant
LOC101928721 transcript variant X6	XR_925202.2:n.	N/A	Intron Variant
LOC101928721 transcript variant X5	XR_925203.2:n.	N/A	Intron Variant
LOC101928721 transcript variant X7	XR_925204.2:n.	N/A	Intron Variant
LOC101928721 transcript variant X8	XR_925205.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.982	G=0.018
1000Genomes	American	Sub	694	A=0.810	G=0.190
1000Genomes	East Asian	Sub	1008	A=0.841	G=0.159
1000Genomes	Europe	Sub	1006	A=0.802	G=0.198
1000Genomes	Global	Study-wide	5008	A=0.885	G=0.115
1000Genomes	South Asian	Sub	978	A=0.940	G=0.060
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.805	G=0.195
The Genome Aggregation Database	African	Sub	8728	A=0.956	G=0.044
The Genome Aggregation Database	American	Sub	834	A=0.850	G=0.150
The Genome Aggregation Database	East Asian	Sub	1612	A=0.848	G=0.152
The Genome Aggregation Database	Europe	Sub	18456	A=0.806	G=0.193
The Genome Aggregation Database	Global	Study-wide	29930	A=0.854	G=0.146
The Genome Aggregation Database	Other	Sub	300	A=0.870	G=0.130
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.798	G=0.202

PMID	Title	Author	Journal
23953852	Genome-wide association studies of maximum number of drinks.	Pan Y	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs10484210	1E-05	alcohol consumption	23953852

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr4	101205288	101205790	E081	16083
chr4	101205808	101205905	E081	16603
chr4	101206023	101206247	E081	16818
chr4	101206300	101206911	E081	17095
chr4	101207762	101208252	E081	18557
chr4	101208348	101208434	E081	19143
chr4	101208545	101208611	E081	19340
chr4	101208833	101209045	E081	19628
chr4	101234157	101234645	E081	44952
chr4	101234710	101234760	E081	45505

rs10484210