SNP Detail Info-rs10495392

Molecule type	Change	Amino acid[Codon]	SO Term
RYR2 transcript	NM_001035.2:c.	N/A	Intron Variant
RYR2 transcript variant X1	XM_006711802.3:c.	N/A	Intron Variant
RYR2 transcript variant X2	XM_006711803.3:c.	N/A	Intron Variant
RYR2 transcript variant X4	XM_006711804.3:c.	N/A	Intron Variant
RYR2 transcript variant X5	XM_006711805.3:c.	N/A	Intron Variant
RYR2 transcript variant X6	XM_006711806.3:c.	N/A	Intron Variant
RYR2 transcript variant X7	XM_006711807.3:c.	N/A	Intron Variant
RYR2 transcript variant X8	XM_006711808.3:c.	N/A	Intron Variant
RYR2 transcript variant X10	XM_006711809.3:c.	N/A	Intron Variant
RYR2 transcript variant X11	XM_006711810.3:c.	N/A	Intron Variant
RYR2 transcript variant X3	XM_017002028.1:c.	N/A	Intron Variant
RYR2 transcript variant X9	XR_949152.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.191	T=0.809
1000Genomes	American	Sub	694	C=0.100	T=0.900
1000Genomes	East Asian	Sub	1008	C=0.070	T=0.930
1000Genomes	Europe	Sub	1006	C=0.119	T=0.881
1000Genomes	Global	Study-wide	5008	C=0.111	T=0.889
1000Genomes	South Asian	Sub	978	C=0.050	T=0.950
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.113	T=0.887
The Genome Aggregation Database	African	Sub	8720	C=0.167	T=0.833
The Genome Aggregation Database	American	Sub	836	C=0.120	T=0.880
The Genome Aggregation Database	East Asian	Sub	1614	C=0.069	T=0.931
The Genome Aggregation Database	Europe	Sub	18472	C=0.099	T=0.900
The Genome Aggregation Database	Global	Study-wide	29944	C=0.118	T=0.881
The Genome Aggregation Database	Other	Sub	302	C=0.140	T=0.860
Trans-Omics for Precision Medicine	Global	Study-wide	29116	C=0.141	T=0.858
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.117	T=0.883

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet
19804850	A common variation in EDAR is a genetic determinant of shovel-shaped incisors.	Kimura R	Am J Hum Genet
18817904	Japanese population structure, based on SNP genotypes from 7003 individuals compared to other ethnic groups: effects on population-based association studies.	Yamaguchi-Kabata Y	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs10495392	4.33E-05	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	237383151	237383277	E067	-39712
chr1	237383438	237384003	E067	-38986
chr1	237445409	237445961	E067	22420
chr1	237383151	237383277	E068	-39712
chr1	237383438	237384003	E068	-38986
chr1	237451297	237451645	E068	28308
chr1	237451747	237451798	E068	28758
chr1	237383438	237384003	E069	-38986
chr1	237445409	237445961	E069	22420
chr1	237446186	237446246	E069	23197
chr1	237446655	237446705	E069	23666
chr1	237383151	237383277	E070	-39712
chr1	237383438	237384003	E070	-38986
chr1	237383151	237383277	E071	-39712
chr1	237451297	237451645	E071	28308
chr1	237383151	237383277	E072	-39712
chr1	237383438	237384003	E072	-38986
chr1	237383151	237383277	E074	-39712
chr1	237445409	237445961	E074	22420
chr1	237446186	237446246	E074	23197
chr1	237451297	237451645	E074	28308
chr1	237383151	237383277	E081	-39712
chr1	237383438	237384003	E081	-38986
chr1	237385280	237385368	E081	-37621
chr1	237383151	237383277	E082	-39712
chr1	237383438	237384003	E082	-38986
chr1	237389531	237390034	E082	-32955
chr1	237418071	237418225	E082	-4764
chr1	237445409	237445961	E082	22420

rs10495392