SNP Detail Info-rs10497148

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0188 (5642/29958,GnomAD)
G=0186 (5434/29118,TOPMED)
G=0137 (687/5008,1000G)
G=0210 (809/3854,ALSPAC)
G=0199 (739/3708,TWINSUK)

Position: chr2:155226832 (GRCh38.p7) (2q24.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.155226832A>G
GRCh37.p13 chr 2	NC_000002.11:g.156083344A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.884	G=0.116
1000Genomes	American	Sub	694	A=0.850	G=0.150
1000Genomes	East Asian	Sub	1008	A=0.933	G=0.067
1000Genomes	Europe	Sub	1006	A=0.773	G=0.227
1000Genomes	Global	Study-wide	5008	A=0.863	G=0.137
1000Genomes	South Asian	Sub	978	A=0.870	G=0.130
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.790	G=0.210
The Genome Aggregation Database	African	Sub	8730	A=0.863	G=0.137
The Genome Aggregation Database	American	Sub	838	A=0.860	G=0.140
The Genome Aggregation Database	East Asian	Sub	1616	A=0.940	G=0.060
The Genome Aggregation Database	Europe	Sub	18472	A=0.774	G=0.225
The Genome Aggregation Database	Global	Study-wide	29958	A=0.811	G=0.188
The Genome Aggregation Database	Other	Sub	302	A=0.780	G=0.220
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.813	G=0.186
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.801	G=0.199

PMID	Title	Author	Journal

SNP ID	p-value	Traits	Study
rs10497148	7.65E-05	alcohol consumption	pha001399

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr2:156083344	KCNJ3	ENSG00000162989.3	A>G	1.1856e-13	528533	Cerebellum

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs10497148