rs10502674

Homo sapiens
C>T
CELF4 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0229 (6873/29936,GnomAD)
T=0273 (7964/29118,TOPMED)
T=0250 (1254/5008,1000G)
T=0161 (622/3854,ALSPAC)
T=0170 (632/3708,TWINSUK)
chr18:37507420 (GRCh38.p7) (18q12.2)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.37507420C>T
GRCh37.p13 chr 18NC_000018.9:g.35087383C>T

Gene: CELF4, CUGBP, Elav-like family member 4(minus strand)

Molecule type Change Amino acid[Codon] SO Term
CELF4 transcript variant 2NM_001025087.1:c.N/AIntron Variant
CELF4 transcript variant 3NM_001025088.1:c.N/AIntron Variant
CELF4 transcript variant 4NM_001025089.1:c.N/AIntron Variant
CELF4 transcript variant 1NM_020180.3:c.N/AIntron Variant
CELF4 transcript variant X14XM_005258308.3:c.N/AIntron Variant
CELF4 transcript variant X1XM_011526079.2:c.N/AIntron Variant
CELF4 transcript variant X5XM_011526081.2:c.N/AIntron Variant
CELF4 transcript variant X2XM_011526083.2:c.N/AIntron Variant
CELF4 transcript variant X3XM_011526084.2:c.N/AIntron Variant
CELF4 transcript variant X4XM_011526085.2:c.N/AIntron Variant
CELF4 transcript variant X6XM_011526086.2:c.N/AIntron Variant
CELF4 transcript variant X7XM_011526087.2:c.N/AIntron Variant
CELF4 transcript variant X12XM_011526090.2:c.N/AIntron Variant
CELF4 transcript variant X27XM_011526091.2:c.N/AIntron Variant
CELF4 transcript variant X28XM_011526092.2:c.N/AIntron Variant
CELF4 transcript variant X8XM_017025840.1:c.N/AIntron Variant
CELF4 transcript variant X10XM_017025841.1:c.N/AIntron Variant
CELF4 transcript variant X13XM_017025842.1:c.N/AIntron Variant
CELF4 transcript variant X15XM_017025843.1:c.N/AIntron Variant
CELF4 transcript variant X16XM_017025844.1:c.N/AIntron Variant
CELF4 transcript variant X17XM_017025845.1:c.N/AIntron Variant
CELF4 transcript variant X18XM_017025846.1:c.N/AIntron Variant
CELF4 transcript variant X19XM_017025847.1:c.N/AIntron Variant
CELF4 transcript variant X20XM_017025848.1:c.N/AIntron Variant
CELF4 transcript variant X21XM_017025849.1:c.N/AIntron Variant
CELF4 transcript variant X24XM_017025850.1:c.N/AIntron Variant
CELF4 transcript variant X25XM_017025851.1:c.N/AIntron Variant
CELF4 transcript variant X26XM_017025852.1:c.N/AIntron Variant
CELF4 transcript variant X29XM_017025853.1:c.N/AIntron Variant
CELF4 transcript variant X30XM_017025854.1:c.N/AIntron Variant
CELF4 transcript variant X31XM_017025855.1:c.N/AIntron Variant
CELF4 transcript variant X32XM_017025856.1:c.N/AIntron Variant
CELF4 transcript variant X33XM_017025857.1:c.N/AIntron Variant
CELF4 transcript variant X34XM_017025858.1:c.N/AIntron Variant
CELF4 transcript variant X35XM_017025859.1:c.N/AIntron Variant
CELF4 transcript variant X36XM_017025860.1:c.N/AIntron Variant
CELF4 transcript variant X37XM_017025861.1:c.N/AIntron Variant
CELF4 transcript variant X38XM_017025862.1:c.N/AIntron Variant
CELF4 transcript variant X39XM_017025863.1:c.N/AIntron Variant
CELF4 transcript variant X40XM_017025864.1:c.N/AIntron Variant
CELF4 transcript variant X41XM_017025865.1:c.N/AIntron Variant
CELF4 transcript variant X42XM_017025866.1:c.N/AGenic Upstream Transcript Variant
CELF4 transcript variant X43XM_017025867.1:c.N/AGenic Upstream Transcript Variant
CELF4 transcript variant X44XM_017025868.1:c.N/AGenic Upstream Transcript Variant
CELF4 transcript variant X45XM_017025869.1:c.N/AGenic Upstream Transcript Variant
CELF4 transcript variant X46XM_017025870.1:c.N/AGenic Upstream Transcript Variant
CELF4 transcript variant X47XM_017025871.1:c.N/AGenic Upstream Transcript Variant
CELF4 transcript variant X48XM_017025872.1:c.N/AGenic Upstream Transcript Variant
CELF4 transcript variant X9XR_001753243.1:n.N/AIntron Variant
CELF4 transcript variant X11XR_001753244.1:n.N/AIntron Variant
CELF4 transcript variant X22XR_001753245.1:n.N/AIntron Variant
CELF4 transcript variant X23XR_001753246.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.529T=0.471
1000GenomesAmericanSub694C=0.840T=0.160
1000GenomesEast AsianSub1008C=0.851T=0.149
1000GenomesEuropeSub1006C=0.851T=0.149
1000GenomesGlobalStudy-wide5008C=0.750T=0.250
1000GenomesSouth AsianSub978C=0.780T=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.839T=0.161
The Genome Aggregation DatabaseAfricanSub8702C=0.583T=0.417
The Genome Aggregation DatabaseAmericanSub838C=0.800T=0.200
The Genome Aggregation DatabaseEast AsianSub1618C=0.860T=0.140
The Genome Aggregation DatabaseEuropeSub18476C=0.849T=0.150
The Genome Aggregation DatabaseGlobalStudy-wide29936C=0.770T=0.229
The Genome Aggregation DatabaseOtherSub302C=0.750T=0.250
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.726T=0.273
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.830T=0.170
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs105026740.000652alcohol dependence21314694

eQTL of rs10502674 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10502674 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr183506644835066492E067-20891
chr183506654435066624E067-20759
chr183506662935066679E067-20704
chr183506676235066877E067-20506
chr183506697135067026E067-20357
chr183506719535067354E067-20029
chr183506737935067876E067-19507
chr183506804335068102E067-19281
chr183507470635074779E067-12604
chr183508032335080377E067-7006
chr183508178435081877E067-5506
chr183508196835082438E067-4945
chr183508270935082862E067-4521
chr183508303535083125E067-4258
chr183508320035083251E067-4132
chr183508454535084746E067-2637
chr183508475435084818E067-2565
chr183508492235085026E067-2357
chr183509657935096776E0679196
chr183509700435097062E0679621
chr183509732235097376E0679939
chr183509741435097464E06710031
chr183511729435117359E06729911
chr183511750735117567E06730124
chr183511762335117753E06730240
chr183511948035119600E06732097
chr183512629335126385E06738910
chr183512641035126460E06739027
chr183512649235126562E06739109
chr183504058735040704E068-46679
chr183504072935040845E068-46538
chr183504103535041098E068-46285
chr183504420335044253E068-43130
chr183505368035053782E068-33601
chr183506644835066492E068-20891
chr183508121535081361E068-6022
chr183508146335081513E068-5870
chr183508178435081877E068-5506
chr183508196835082438E068-4945
chr183508270935082862E068-4521
chr183508303535083125E068-4258
chr183508434135084381E068-3002
chr183508454535084746E068-2637
chr183508475435084818E068-2565
chr183509956835099907E06812185
chr183510159035101790E06814207
chr183510197535102071E06814592
chr183510207435102161E06814691
chr183507489335074968E069-12415
chr183508178435081877E069-5506
chr183508196835082438E069-4945
chr183508270935082862E069-4521
chr183508303535083125E069-4258
chr183508320035083251E069-4132
chr183508353135083576E069-3807
chr183508454535084746E069-2637
chr183508475435084818E069-2565
chr183508492235085026E069-2357
chr183509154335091616E0694160
chr183509179635091949E0694413
chr183509198335092275E0694600
chr183509232535092380E0694942
chr183509305435093211E0695671
chr183509323335093283E0695850
chr183509328935093339E0695906
chr183509371635093766E0696333
chr183509378035093820E0696397
chr183509578635095826E0698403
chr183509596435096004E0698581
chr183509631535096454E0698932
chr183509657935096776E0699196
chr183509700435097062E0699621
chr183510018535100265E06912802
chr183511928635119416E06931903
chr183511948035119600E06932097
chr183512048635120546E06933103
chr183504058735040704E070-46679
chr183504072935040845E070-46538
chr183504400135044051E070-43332
chr183504420335044253E070-43130
chr183504430635044470E070-42913
chr183504478635044915E070-42468
chr183504547335045513E070-41870
chr183504566635045732E070-41651
chr183504600535046324E070-41059
chr183504637935046435E070-40948
chr183504649835046566E070-40817
chr183504659235046636E070-40747
chr183504667435046724E070-40659
chr183504694035046990E070-40393
chr183504941735049505E070-37878
chr183504974735049814E070-37569
chr183505017135050221E070-37162
chr183505142635051692E070-35691
chr183505172435051962E070-35421
chr183505199635052087E070-35296
chr183505210535052187E070-35196
chr183505224435052294E070-35089
chr183505244735052528E070-34855
chr183505277435052839E070-34544
chr183505308835053139E070-34244
chr183505315935053238E070-34145
chr183505328935053412E070-33971
chr183505352435053667E070-33716
chr183505822835058278E070-29105
chr183505832435058368E070-29015
chr183506313535063191E070-24192
chr183506325435064142E070-23241
chr183506737935067876E070-19507
chr183506789335067942E070-19441
chr183506804335068102E070-19281
chr183506836835068475E070-18908
chr183507036335070699E070-16684
chr183507085335071000E070-16383
chr183507118635071226E070-16157
chr183507165635071699E070-15684
chr183507185835072033E070-15350
chr183507204135072085E070-15298
chr183507210335072143E070-15240
chr183507247035072538E070-14845
chr183507267635072726E070-14657
chr183507882335078897E070-8486
chr183507894235079497E070-7886
chr183507954535079721E070-7662
chr183507978435079834E070-7549
chr183508196835082438E070-4945
chr183508270935082862E070-4521
chr183509154335091616E0704160
chr183509179635091949E0704413
chr183509198335092275E0704600
chr183509232535092380E0704942
chr183509499535095190E0707612
chr183509538135095617E0707998
chr183509578635095826E0708403
chr183509596435096004E0708581
chr183509631535096454E0708932
chr183509657935096776E0709196
chr183509700435097062E0709621
chr183509732235097376E0709939
chr183509741435097464E07010031
chr183509809435098138E07010711
chr183509883335098887E07011450
chr183509891835098968E07011535
chr183510197535102071E07014592
chr183510207435102161E07014691
chr183510224635102320E07014863
chr183510241235102478E07015029
chr183511365335113925E07026270
chr183511471035115018E07027327
chr183511564235115846E07028259
chr183511595535116305E07028572
chr183511634835116426E07028965
chr183511654335116967E07029160
chr183511729435117359E07029911
chr183511750735117567E07030124
chr183511762335117753E07030240
chr183511775535118372E07030372
chr183511928635119416E07031903
chr183512731735127411E07039934
chr183512743235127751E07040049
chr183513192935132076E07044546
chr183506676235066877E071-20506
chr183506697135067026E071-20357
chr183508121535081361E071-6022
chr183508146335081513E071-5870
chr183508270935082862E071-4521
chr183508362935083686E071-3697
chr183508388235083988E071-3395
chr183508402435084078E071-3305
chr183508434135084381E071-3002
chr183508454535084746E071-2637
chr183508475435084818E071-2565
chr183508492235085026E071-2357
chr183508514135085237E071-2146
chr183509305435093211E0715671
chr183509323335093283E0715850
chr183509328935093339E0715906
chr183509657935096776E0719196
chr183509700435097062E0719621
chr183511775535118372E07130372
chr183503778535037997E072-49386
chr183505648935056626E072-30757
chr183505667435056908E072-30475
chr183505694035057033E072-30350
chr183507954535079721E072-7662
chr183507978435079834E072-7549
chr183507991835080238E072-7145
chr183508032335080377E072-7006
chr183508121535081361E072-6022
chr183508146335081513E072-5870
chr183508178435081877E072-5506
chr183508196835082438E072-4945
chr183508270935082862E072-4521
chr183508303535083125E072-4258
chr183508454535084746E072-2637
chr183508475435084818E072-2565
chr183508492235085026E072-2357
chr183508514135085237E072-2146
chr183509305435093211E0725671
chr183509323335093283E0725850
chr183509328935093339E0725906
chr183509371635093766E0726333
chr183509378035093820E0726397
chr183509657935096776E0729196
chr183509700435097062E0729621
chr183509732235097376E0729939
chr183509741435097464E07210031
chr183510241235102478E07215029
chr183511729435117359E07229911
chr183511750735117567E07230124
chr183511762335117753E07230240
chr183511775535118372E07230372
chr183511928635119416E07231903
chr183511948035119600E07232097
chr183512048635120546E07233103
chr183512059135120651E07233208
chr183512073035120790E07233347
chr183503778535037997E073-49386
chr183506325435064142E073-23241
chr183507954535079721E073-7662
chr183507978435079834E073-7549
chr183507991835080238E073-7145
chr183508032335080377E073-7006
chr183508121535081361E073-6022
chr183508146335081513E073-5870
chr183508178435081877E073-5506
chr183508196835082438E073-4945
chr183508270935082862E073-4521
chr183508303535083125E073-4258
chr183508320035083251E073-4132
chr183508353135083576E073-3807
chr183508454535084746E073-2637
chr183508475435084818E073-2565
chr183508492235085026E073-2357
chr183509700435097062E0739621
chr183509732235097376E0739939
chr183509741435097464E07310031
chr183510159035101790E07314207
chr183510197535102071E07314592
chr183510207435102161E07314691
chr183510224635102320E07314863
chr183510982835109877E07322445
chr183511634835116426E07328965
chr183511654335116967E07329160
chr183511729435117359E07329911
chr183511750735117567E07330124
chr183511762335117753E07330240
chr183511775535118372E07330372
chr183511928635119416E07331903
chr183511948035119600E07332097
chr183512059135120651E07333208
chr183512073035120790E07333347
chr183512093035120980E07333547
chr183512438635124533E07337003
chr183512629335126385E07338910
chr183512641035126460E07339027
chr183512649235126562E07339109
chr183512731735127411E07339934
chr183508270935082862E074-4521
chr183508303535083125E074-4258
chr183508320035083251E074-4132
chr183508353135083576E074-3807
chr183508362935083686E074-3697
chr183508388235083988E074-3395
chr183508402435084078E074-3305
chr183508434135084381E074-3002
chr183508454535084746E074-2637
chr183508475435084818E074-2565
chr183508492235085026E074-2357
chr183508514135085237E074-2146
chr183509305435093211E0745671
chr183509323335093283E0745850
chr183509328935093339E0745906
chr183509631535096454E0748932
chr183509657935096776E0749196
chr183509700435097062E0749621
chr183504400135044051E081-43332
chr183504420335044253E081-43130
chr183504430635044470E081-42913
chr183504547335045513E081-41870
chr183504566635045732E081-41651
chr183504600535046324E081-41059
chr183504637935046435E081-40948
chr183504649835046566E081-40817
chr183504659235046636E081-40747
chr183504667435046724E081-40659
chr183504694035046990E081-40393
chr183504796335048043E081-39340
chr183506325435064142E081-23241
chr183506644835066492E081-20891
chr183506654435066624E081-20759
chr183506662935066679E081-20704
chr183506676235066877E081-20506
chr183506737935067876E081-19507
chr183506789335067942E081-19441
chr183506804335068102E081-19281
chr183507825235078303E081-9080
chr183507834335078393E081-8990
chr183507855135078629E081-8754
chr183507863135078767E081-8616
chr183507882335078897E081-8486
chr183507894235079497E081-7886
chr183507954535079721E081-7662
chr183507978435079834E081-7549
chr183507991835080238E081-7145
chr183508032335080377E081-7006
chr183508178435081877E081-5506
chr183508196835082438E081-4945
chr183508270935082862E081-4521
chr183508303535083125E081-4258
chr183508475435084818E081-2565
chr183508492235085026E081-2357
chr183508514135085237E081-2146
chr183508529135085401E081-1982
chr183509198335092275E0814600
chr183509232535092380E0814942
chr183509538135095617E0817998
chr183509578635095826E0818403
chr183509596435096004E0818581
chr183509700435097062E0819621
chr183509732235097376E0819939
chr183510111135101309E08113728
chr183510159035101790E08114207
chr183510197535102071E08114592
chr183510207435102161E08114691
chr183510224635102320E08114863
chr183510241235102478E08115029
chr183511471035115018E08127327
chr183511762335117753E08130240
chr183511775535118372E08130372
chr183511928635119416E08131903
chr183511948035119600E08132097
chr183512438635124533E08137003
chr183512460235124700E08137219
chr183512472135124878E08137338
chr183512489635124976E08137513
chr183512515535125231E08137772
chr183512527035125420E08137887
chr183512551535126262E08138132
chr183512629335126385E08138910
chr183512641035126460E08139027
chr183512649235126562E08139109
chr183512731735127411E08139934
chr183512743235127751E08140049
chr183512778035127870E08140397
chr183512860035128661E08141217
chr183513009535130135E08142712
chr183513576335135813E08148380
chr183513703035137080E08149647
chr183513720035137260E08149817
chr183504400135044051E082-43332
chr183504420335044253E082-43130
chr183504430635044470E082-42913
chr183504600535046324E082-41059
chr183504637935046435E082-40948
chr183504649835046566E082-40817
chr183504659235046636E082-40747
chr183506325435064142E082-23241
chr183506644835066492E082-20891
chr183506654435066624E082-20759
chr183507185835072033E082-15350
chr183507204135072085E082-15298
chr183507210335072143E082-15240
chr183507882335078897E082-8486
chr183507894235079497E082-7886
chr183507954535079721E082-7662
chr183507978435079834E082-7549
chr183507991835080238E082-7145
chr183508032335080377E082-7006
chr183508121535081361E082-6022
chr183508146335081513E082-5870
chr183508178435081877E082-5506
chr183508196835082438E082-4945
chr183508270935082862E082-4521
chr183508303535083125E082-4258
chr183509538135095617E0827998
chr183509578635095826E0828403
chr183509596435096004E0828581
chr183509631535096454E0828932
chr183509657935096776E0829196
chr183509700435097062E0829621
chr183509932435099392E08211941
chr183509946935099537E08212086
chr183509956835099907E08212185
chr183511365335113925E08226270
chr183511471035115018E08227327
chr183512416635124310E08236783
chr183512438635124533E08237003
chr183512515535125231E08237772
chr183512527035125420E08237887
chr183512860035128661E08241217










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr183506416435064825E068-22558
chr183506496335066035E068-21348
chr183510435635104591E06816973
chr183506416435064825E069-22558
chr183506496335066035E069-21348
chr183506416435064825E070-22558
chr183510435635104591E07016973
chr183510459935105775E07017216
chr183506416435064825E072-22558
chr183506496335066035E072-21348
chr183510435635104591E07216973
chr183510459935105775E07217216
chr183506416435064825E073-22558
chr183506496335066035E073-21348
chr183510459935105775E07317216
chr183506496335066035E082-21348
chr183510435635104591E08216973
chr183510459935105775E08217216