rs10512096

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0308 (9219/29920,GnomAD)
T==0343 (9989/29118,TOPMED)
T==0253 (1266/5008,1000G)
T==0288 (1111/3854,ALSPAC)
T==0282 (1047/3708,TWINSUK)
chr9:80115418 (GRCh38.p7) (9q21.31)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.80115418T>C
GRCh37.p13 chr 9NC_000009.11:g.82730333T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.439C=0.561
1000GenomesAmericanSub694T=0.200C=0.800
1000GenomesEast AsianSub1008T=0.045C=0.955
1000GenomesEuropeSub1006T=0.281C=0.719
1000GenomesGlobalStudy-wide5008T=0.253C=0.747
1000GenomesSouth AsianSub978T=0.220C=0.780
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.288C=0.712
The Genome Aggregation DatabaseAfricanSub8684T=0.424C=0.576
The Genome Aggregation DatabaseAmericanSub836T=0.190C=0.810
The Genome Aggregation DatabaseEast AsianSub1620T=0.043C=0.957
The Genome Aggregation DatabaseEuropeSub18478T=0.282C=0.717
The Genome Aggregation DatabaseGlobalStudy-wide29920T=0.308C=0.691
The Genome Aggregation DatabaseOtherSub302T=0.290C=0.710
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.343C=0.656
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.282C=0.718
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs105120965.6E-05alcoholism (heaviness of drinking)21529783

eQTL of rs10512096 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10512096 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr98277356582774172E06843232
chr98277177482773115E07041441
chr98277316182773374E07042828
chr98277338882773483E07043055
chr98277356582774172E07043232
chr98277177482773115E08241441
chr98277316182773374E08242828
chr98277338882773483E08243055
chr98277356582774172E08243232