SNP Detail Info-rs10512096

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T==0308 (9219/29920,GnomAD)
T==0343 (9989/29118,TOPMED)
T==0253 (1266/5008,1000G)
T==0288 (1111/3854,ALSPAC)
T==0282 (1047/3708,TWINSUK)

Position: chr9:80115418 (GRCh38.p7) (9q21.31)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 9 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.80115418T>C
GRCh37.p13 chr 9	NC_000009.11:g.82730333T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.439	C=0.561
1000Genomes	American	Sub	694	T=0.200	C=0.800
1000Genomes	East Asian	Sub	1008	T=0.045	C=0.955
1000Genomes	Europe	Sub	1006	T=0.281	C=0.719
1000Genomes	Global	Study-wide	5008	T=0.253	C=0.747
1000Genomes	South Asian	Sub	978	T=0.220	C=0.780
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.288	C=0.712
The Genome Aggregation Database	African	Sub	8684	T=0.424	C=0.576
The Genome Aggregation Database	American	Sub	836	T=0.190	C=0.810
The Genome Aggregation Database	East Asian	Sub	1620	T=0.043	C=0.957
The Genome Aggregation Database	Europe	Sub	18478	T=0.282	C=0.717
The Genome Aggregation Database	Global	Study-wide	29920	T=0.308	C=0.691
The Genome Aggregation Database	Other	Sub	302	T=0.290	C=0.710
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.343	C=0.656
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.282	C=0.718

PMID	Title	Author	Journal
21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Heath AC	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs10512096	5.6E-05	alcoholism (heaviness of drinking)	21529783

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	82773565	82774172	E068	43232
chr9	82771774	82773115	E070	41441
chr9	82773161	82773374	E070	42828
chr9	82773388	82773483	E070	43055
chr9	82773565	82774172	E070	43232
chr9	82771774	82773115	E082	41441
chr9	82773161	82773374	E082	42828
chr9	82773388	82773483	E082	43055
chr9	82773565	82774172	E082	43232

rs10512096