rs10513224

Homo sapiens
A>C
ZNF618 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0361 (10819/29906,GnomAD)
C=0289 (8414/29118,TOPMED)
C=0361 (1810/5008,1000G)
C=0334 (1287/3854,ALSPAC)
C=0329 (1220/3708,TWINSUK)
chr9:113979159 (GRCh38.p7) (9q32)
AD
GWASdb2
1   publication(s)
See rs on genome
159 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.113979159A>C
GRCh37.p13 chr 9NC_000009.11:g.116741439A>C

Gene: ZNF618, zinc finger protein 618(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF618 transcript variant 2NM_001318040.1:c.N/AIntron Variant
ZNF618 transcript variant 3NM_001318041.1:c.N/AIntron Variant
ZNF618 transcript variant 4NM_001318042.1:c.N/AIntron Variant
ZNF618 transcript variant 1NM_133374.2:c.N/AIntron Variant
ZNF618 transcript variant X1XM_005251692.2:c.N/AIntron Variant
ZNF618 transcript variant X18XM_005251699.2:c.N/AIntron Variant
ZNF618 transcript variant X3XM_011518200.1:c.N/AIntron Variant
ZNF618 transcript variant X6XM_011518201.1:c.N/AIntron Variant
ZNF618 transcript variant X7XM_011518203.2:c.N/AIntron Variant
ZNF618 transcript variant X11XM_011518204.2:c.N/AIntron Variant
ZNF618 transcript variant X2XM_017014241.1:c.N/AIntron Variant
ZNF618 transcript variant X4XM_017014242.1:c.N/AIntron Variant
ZNF618 transcript variant X5XM_017014243.1:c.N/AIntron Variant
ZNF618 transcript variant X8XM_017014244.1:c.N/AIntron Variant
ZNF618 transcript variant X9XM_017014245.1:c.N/AIntron Variant
ZNF618 transcript variant X10XM_017014246.1:c.N/AIntron Variant
ZNF618 transcript variant X13XM_017014248.1:c.N/AIntron Variant
ZNF618 transcript variant X14XM_017014249.1:c.N/AIntron Variant
ZNF618 transcript variant X15XM_017014250.1:c.N/AIntron Variant
ZNF618 transcript variant X17XM_017014252.1:c.N/AIntron Variant
ZNF618 transcript variant X12XM_017014247.1:c.N/A5 Prime UTR Variant
ZNF618 transcript variant X19XM_011518209.2:c.N/AGenic Upstream Transcript Variant
ZNF618 transcript variant X16XM_017014251.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.739C=0.261
1000GenomesAmericanSub694A=0.720C=0.280
1000GenomesEast AsianSub1008A=0.359C=0.641
1000GenomesEuropeSub1006A=0.681C=0.319
1000GenomesGlobalStudy-wide5008A=0.639C=0.361
1000GenomesSouth AsianSub978A=0.690C=0.310
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.666C=0.334
The Genome Aggregation DatabaseAfricanSub8710A=0.734C=0.266
The Genome Aggregation DatabaseAmericanSub838A=0.640C=0.360
The Genome Aggregation DatabaseEast AsianSub1616A=0.358C=0.642
The Genome Aggregation DatabaseEuropeSub18440A=0.615C=0.384
The Genome Aggregation DatabaseGlobalStudy-wide29906A=0.638C=0.361
The Genome Aggregation DatabaseOtherSub302A=0.760C=0.240
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.711C=0.289
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.671C=0.329
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs105132240.000826alcohol dependence21314694

eQTL of rs10513224 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10513224 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9116753274116753514E06711835
chr9116753616116753710E06712177
chr9116753756116753807E06712317
chr9116753932116753982E06712493
chr9116754016116754098E06712577
chr9116754151116754257E06712712
chr9116754327116754378E06712888
chr9116754708116754813E06713269
chr9116755638116755708E06714199
chr9116756033116756311E06714594
chr9116756326116756918E06714887
chr9116756921116757042E06715482
chr9116765570116767125E06724131
chr9116738702116738789E068-2650
chr9116753274116753514E06811835
chr9116753616116753710E06812177
chr9116753756116753807E06812317
chr9116753932116753982E06812493
chr9116754016116754098E06812577
chr9116754151116754257E06812712
chr9116755638116755708E06814199
chr9116756033116756311E06814594
chr9116756326116756918E06814887
chr9116756921116757042E06815482
chr9116761936116762080E06820497
chr9116762093116762325E06820654
chr9116762514116762600E06821075
chr9116765570116767125E06824131
chr9116750837116750881E0699398
chr9116752885116753153E06911446
chr9116753274116753514E06911835
chr9116753616116753710E06912177
chr9116753756116753807E06912317
chr9116753932116753982E06912493
chr9116754151116754257E06912712
chr9116754327116754378E06912888
chr9116755638116755708E06914199
chr9116756326116756918E06914887
chr9116756921116757042E06915482
chr9116761232116761356E06919793
chr9116761473116761523E06920034
chr9116761722116761776E06920283
chr9116765570116767125E06924131
chr9116711996116712079E070-29360
chr9116712109116712159E070-29280
chr9116712210116712284E070-29155
chr9116712322116712467E070-28972
chr9116712609116712752E070-28687
chr9116726875116727022E070-14417
chr9116753756116753807E07012317
chr9116753932116753982E07012493
chr9116754016116754098E07012577
chr9116754151116754257E07012712
chr9116754708116754813E07013269
chr9116754868116755515E07013429
chr9116755638116755708E07014199
chr9116756033116756311E07014594
chr9116756326116756918E07014887
chr9116756921116757042E07015482
chr9116757097116757361E07015658
chr9116757462116757596E07016023
chr9116758326116758617E07016887
chr9116758646116758728E07017207
chr9116758846116758942E07017407
chr9116758997116759047E07017558
chr9116764384116764454E07022945
chr9116764501116764551E07023062
chr9116764997116765086E07023558
chr9116765570116767125E07024131
chr9116750837116750881E0719398
chr9116751017116752111E0719578
chr9116753274116753514E07111835
chr9116753616116753710E07112177
chr9116753756116753807E07112317
chr9116753932116753982E07112493
chr9116754016116754098E07112577
chr9116754151116754257E07112712
chr9116754327116754378E07112888
chr9116756921116757042E07115482
chr9116764384116764454E07122945
chr9116764501116764551E07123062
chr9116764997116765086E07123558
chr9116765570116767125E07124131
chr9116752885116753153E07211446
chr9116753274116753514E07211835
chr9116753616116753710E07212177
chr9116753756116753807E07212317
chr9116753932116753982E07212493
chr9116754016116754098E07212577
chr9116754151116754257E07212712
chr9116754327116754378E07212888
chr9116756033116756311E07214594
chr9116756326116756918E07214887
chr9116756921116757042E07215482
chr9116764997116765086E07223558
chr9116749728116749859E0738289
chr9116751017116752111E0739578
chr9116752179116752350E07310740
chr9116753274116753514E07311835
chr9116753616116753710E07312177
chr9116753756116753807E07312317
chr9116753932116753982E07312493
chr9116754016116754098E07312577
chr9116754151116754257E07312712
chr9116754327116754378E07312888
chr9116756326116756918E07314887
chr9116756921116757042E07315482
chr9116760828116760890E07319389
chr9116760993116761206E07319554
chr9116761232116761356E07319793
chr9116761473116761523E07320034
chr9116761722116761776E07320283
chr9116761936116762080E07320497
chr9116762093116762325E07320654
chr9116765570116767125E07324131
chr9116695427116695503E074-45936
chr9116695522116695775E074-45664
chr9116695802116695932E074-45507
chr9116752179116752350E07410740
chr9116752406116752456E07410967
chr9116752885116753153E07411446
chr9116753274116753514E07411835
chr9116753616116753710E07412177
chr9116753756116753807E07412317
chr9116753932116753982E07412493
chr9116754016116754098E07412577
chr9116754151116754257E07412712
chr9116754327116754378E07412888
chr9116754708116754813E07413269
chr9116756033116756311E07414594
chr9116756326116756918E07414887
chr9116756921116757042E07415482
chr9116765570116767125E07424131
chr9116750837116750881E0819398
chr9116751017116752111E0819578
chr9116754708116754813E08113269
chr9116754868116755515E08113429
chr9116756326116756918E08114887
chr9116756921116757042E08115482
chr9116757097116757361E08115658
chr9116757462116757596E08116023
chr9116757799116758010E08116360
chr9116764384116764454E08122945
chr9116764501116764551E08123062
chr9116764997116765086E08123558
chr9116765570116767125E08124131
chr9116708251116708470E082-32969
chr9116754708116754813E08213269
chr9116754868116755515E08213429
chr9116755638116755708E08214199
chr9116756033116756311E08214594
chr9116756326116756918E08214887
chr9116756921116757042E08215482
chr9116757097116757361E08215658
chr9116757462116757596E08216023
chr9116757799116758010E08216360
chr9116759868116759918E08218429
chr9116765570116767125E08224131
chr9116767537116767608E08226098