rs10515153

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0017 (511/29970,GnomAD)
C=0025 (749/29118,TOPMED)
C=0018 (90/5008,1000G)
C=0000 (1/3854,ALSPAC)
C=0001 (5/3708,TWINSUK)
chr5:72693323 (GRCh38.p7) (5q13.2)
AD
GWASdb2
1   publication(s)
See rs on genome
28 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.72693323T>C
GRCh37.p13 chr 5NC_000005.9:g.71989150T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.939C=0.061
1000GenomesAmericanSub694T=0.990C=0.010
1000GenomesEast AsianSub1008T=1.000C=0.000
1000GenomesEuropeSub1006T=1.000C=0.000
1000GenomesGlobalStudy-wide5008T=0.982C=0.018
1000GenomesSouth AsianSub978T=1.000C=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=1.000C=0.000
The Genome Aggregation DatabaseAfricanSub8720T=0.945C=0.055
The Genome Aggregation DatabaseAmericanSub836T=0.990C=0.010
The Genome Aggregation DatabaseEast AsianSub1604T=1.000C=0.000
The Genome Aggregation DatabaseEuropeSub18508T=0.998C=0.001
The Genome Aggregation DatabaseGlobalStudy-wide29970T=0.982C=0.017
The Genome Aggregation DatabaseOtherSub302T=0.990C=0.010
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.974C=0.025
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.999C=0.001
PMID Title Author Journal

P-Value

SNP ID p-value Traits Study
rs105151533.5E-15alcohol consumptionpha001398

eQTL of rs10515153 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10515153 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr57198774071987817E068-1333
chr57198782371988104E068-1046
chr57194340971943491E069-45659
chr57194368171943904E069-45246
chr57198321471983692E070-5458
chr57198382571984094E070-5056
chr57194311571943266E071-45884
chr57194340971943491E071-45659
chr57194368171943904E071-45246
chr57194368171943904E073-45246
chr57194311571943266E081-45884
chr57194340971943491E081-45659
chr57194368171943904E081-45246
chr57194438971944595E081-44555
chr57194468271944873E081-44277
chr57194944571949821E081-39329
chr57195014971950425E081-38725
chr57195087171950940E081-38210
chr57198321471983692E081-5458
chr57198382571984094E081-5056
chr57199449271994542E0815342
chr57199455171994659E0815401
chr57203772072037901E08148570
chr57203793572037995E08148785
chr57195014971950425E082-38725
chr57198321471983692E082-5458
chr57203772072037901E08248570
chr57203793572037995E08248785