SNP Detail Info-rs10649162

Organism: Homo sapiens

Alleles: dupAG

Gene : Feature

None

p-value: Check p-value

Variation Type: Indel (Insertion and Deletion)

Frequency:

AG==0150 (753/5008,1000G)
AG==0211 (815/3854,ALSPAC)
AG==0205 (760/3708,TWINSUK)

Position: chr6:153299421-153299422 (GRCh38.p7) (6q25.2)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 5 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.153299421_153299422dup
GRCh37.p13 chr 6	NC_000006.11:g.153620556_153620557dup

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	AG=0.063	dupAG=0.937
1000Genomes	American	Sub	694	AG=0.110	dupAG=0.890
1000Genomes	East Asian	Sub	1008	AG=0.227	dupAG=0.773
1000Genomes	Europe	Sub	1006	AG=0.211	dupAG=0.789
1000Genomes	Global	Study-wide	5008	AG=0.150	dupAG=0.850
1000Genomes	South Asian	Sub	978	AG=0.160	dupAG=0.840
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	AG=0.211	dupAG=0.789
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	AG=0.205	dupAG=0.795

PMID	Title	Author	Journal
26365420	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Mbarek H	Am J Med Genet B Neuropsychiatr Genet

SNP ID	p-value	Traits	Study
rs10649162	5E-06	alcohol dependence	26365420

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	153625642	153625682	E070	5086
chr6	153627745	153627809	E070	7189
chr6	153628942	153628996	E070	8386
chr6	153633705	153634161	E070	13149
chr6	153634202	153634263	E070	13646

rs10649162