rs10649162

Homo sapiens
dupAG
None
Check p-value
Indel (Insertion and Deletion)
AG==0150 (753/5008,1000G)
AG==0211 (815/3854,ALSPAC)
AG==0205 (760/3708,TWINSUK)
chr6:153299421-153299422 (GRCh38.p7) (6q25.2)
AD
GWASCatalog
1   publication(s)
See rs on genome
5 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.153299421_153299422dup
GRCh37.p13 chr 6NC_000006.11:g.153620556_153620557dup

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322AG=0.063dupAG=0.937
1000GenomesAmericanSub694AG=0.110dupAG=0.890
1000GenomesEast AsianSub1008AG=0.227dupAG=0.773
1000GenomesEuropeSub1006AG=0.211dupAG=0.789
1000GenomesGlobalStudy-wide5008AG=0.150dupAG=0.850
1000GenomesSouth AsianSub978AG=0.160dupAG=0.840
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854AG=0.211dupAG=0.789
UK 10K study - TwinsTWIN COHORTStudy-wide3708AG=0.205dupAG=0.795
PMID Title Author Journal
26365420The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.Mbarek HAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs106491625E-06alcohol dependence26365420

eQTL of rs10649162 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10649162 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6153625642153625682E0705086
chr6153627745153627809E0707189
chr6153628942153628996E0708386
chr6153633705153634161E07013149
chr6153634202153634263E07013646