SNP Detail Info-rs1067344

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.44393671T>G
GRCh37.p13 chr 2	NC_000002.11:g.44620810T>G
CAMKMT RefSeqGene	NG_032944.1:g.36768T>G

Gene: CAMKMT, calmodulin-lysine N-methyltransferase(plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
CAMKMT transcript	NM_024766.4:c.	N/A	Intron Variant
CAMKMT transcript variant X2	XM_011533111.2:c.	N/A	Intron Variant
CAMKMT transcript variant X6	XM_017004970.1:c.	N/A	Intron Variant
CAMKMT transcript variant X7	XM_017004971.1:c.	N/A	Intron Variant
CAMKMT transcript variant X13	XM_017004975.1:c.	N/A	Intron Variant
CAMKMT transcript variant X14	XM_017004976.1:c.	N/A	Intron Variant
CAMKMT transcript variant X17	XM_017004977.1:c.	N/A	Intron Variant
CAMKMT transcript variant X18	XM_017004978.1:c.	N/A	Intron Variant
CAMKMT transcript variant X19	XM_017004979.1:c.	N/A	Intron Variant
CAMKMT transcript variant X20	XM_017004980.1:c.	N/A	Intron Variant
CAMKMT transcript variant X21	XM_017004981.1:c.	N/A	Intron Variant
CAMKMT transcript variant X9	XM_017004973.1:c.	N/A	3 Prime UTR Variant
CAMKMT transcript variant X11	XM_017004974.1:c.	N/A	3 Prime UTR Variant
CAMKMT transcript variant X24	XM_011533113.2:c.	N/A	Genic Upstream Transcript Variant
CAMKMT transcript variant X22	XM_017004982.1:c.	N/A	Genic Upstream Transcript Variant
CAMKMT transcript variant X23	XM_017004983.1:c.	N/A	Genic Upstream Transcript Variant
CAMKMT transcript variant X8	XM_017004972.1:c.	N/A	Genic Downstream Transcript Variant
CAMKMT transcript variant X1	XR_001738949.1:n.	N/A	Intron Variant
CAMKMT transcript variant X5	XR_001738950.1:n.	N/A	Intron Variant
CAMKMT transcript variant X10	XR_001738951.1:n.	N/A	Intron Variant
CAMKMT transcript variant X12	XR_001738952.1:n.	N/A	Intron Variant
CAMKMT transcript variant X15	XR_001738953.1:n.	N/A	Intron Variant
CAMKMT transcript variant X16	XR_001738954.1:n.	N/A	Intron Variant
CAMKMT transcript variant X3	XR_939722.2:n.	N/A	Intron Variant
CAMKMT transcript variant X4	XR_939723.1:n.	N/A	Intron Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.093	G=0.907
1000Genomes	American	Sub	694	T=0.290	G=0.710
1000Genomes	East Asian	Sub	1008	T=0.659	G=0.341
1000Genomes	Europe	Sub	1006	T=0.159	G=0.841
1000Genomes	Global	Study-wide	5008	T=0.260	G=0.740
1000Genomes	South Asian	Sub	978	T=0.150	G=0.850
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.150	G=0.850
The Genome Aggregation Database	African	Sub	8722	T=0.106	G=0.894
The Genome Aggregation Database	American	Sub	838	T=0.370	G=0.630
The Genome Aggregation Database	East Asian	Sub	1608	T=0.694	G=0.306
The Genome Aggregation Database	Europe	Sub	18478	T=0.191	G=0.808
The Genome Aggregation Database	Global	Study-wide	29948	T=0.198	G=0.802
The Genome Aggregation Database	Other	Sub	302	T=0.140	G=0.860
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.158	G=0.842

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

P-Value

SNP ID	p-value	Traits	Study
rs1067344	0.000349	alcohol dependence	21314694

eQTL of rs1067344 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs1067344 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Enhancer Annotation (GRCh37.p13)

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	44577856	44577921	E067	-42889
chr2	44578379	44578857	E067	-41953
chr2	44578860	44579142	E067	-41668
chr2	44579151	44579282	E067	-41528
chr2	44577856	44577921	E068	-42889
chr2	44578379	44578857	E068	-41953
chr2	44578860	44579142	E068	-41668
chr2	44579151	44579282	E068	-41528
chr2	44584538	44584599	E068	-36211
chr2	44584800	44584892	E068	-35918
chr2	44585393	44585443	E068	-35367
chr2	44600030	44600110	E068	-20700
chr2	44577856	44577921	E069	-42889
chr2	44578379	44578857	E069	-41953
chr2	44578860	44579142	E069	-41668
chr2	44579151	44579282	E069	-41528
chr2	44584538	44584599	E069	-36211
chr2	44585702	44585956	E069	-34854
chr2	44585393	44585443	E070	-35367
chr2	44585702	44585956	E070	-34854
chr2	44577856	44577921	E071	-42889
chr2	44578379	44578857	E071	-41953
chr2	44578860	44579142	E071	-41668
chr2	44579151	44579282	E071	-41528
chr2	44585702	44585956	E071	-34854
chr2	44587066	44587163	E071	-33647
chr2	44578379	44578857	E072	-41953
chr2	44578860	44579142	E072	-41668
chr2	44579151	44579282	E072	-41528
chr2	44584538	44584599	E072	-36211
chr2	44585702	44585956	E072	-34854
chr2	44577856	44577921	E073	-42889
chr2	44578379	44578857	E073	-41953
chr2	44578860	44579142	E073	-41668
chr2	44579151	44579282	E073	-41528
chr2	44578379	44578857	E074	-41953
chr2	44578860	44579142	E074	-41668
chr2	44579151	44579282	E074	-41528
chr2	44585393	44585443	E074	-35367
chr2	44585702	44585956	E074	-34854
chr2	44587066	44587163	E074	-33647
chr2	44587066	44587163	E081	-33647
chr2	44584538	44584599	E082	-36211

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr2	44587685	44590383	E067	-30427
chr2	44587685	44590383	E068	-30427
chr2	44587685	44590383	E069	-30427
chr2	44587685	44590383	E070	-30427
chr2	44587685	44590383	E071	-30427
chr2	44587685	44590383	E072	-30427
chr2	44587685	44590383	E073	-30427
chr2	44587685	44590383	E074	-30427
chr2	44587685	44590383	E081	-30427
chr2	44587685	44590383	E082	-30427

rs1067344

Genomic Coordinates

Gene: CAMKMT, calmodulin-lysine N-methyltransferase(plus strand)

Population Frequency

P-Value

eQTL of rs1067344 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs1067344 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)

Promoter Annotation (GRCh37.p13)