SNP Detail Info-rs10738186

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0177 (5271/29708,GnomAD)
G==0272 (7926/29118,TOPMED)
G==0290 (1454/5008,1000G)
G==0006 (22/3854,ALSPAC)
G==0003 (12/3708,TWINSUK)

Position: chr9:10753414 (GRCh38.p7) (9p23)

Phenotype: OD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 5 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.10753414G>A
GRCh37.p13 chr 9	NC_000009.11:g.10753414G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.627	A=0.373
1000Genomes	American	Sub	694	G=0.330	A=0.670
1000Genomes	East Asian	Sub	1008	G=0.202	A=0.798
1000Genomes	Europe	Sub	1006	G=0.012	A=0.988
1000Genomes	Global	Study-wide	5008	G=0.290	A=0.710
1000Genomes	South Asian	Sub	978	G=0.190	A=0.810
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.006	A=0.994
The Genome Aggregation Database	African	Sub	8608	G=0.534	A=0.466
The Genome Aggregation Database	American	Sub	822	G=0.310	A=0.690
The Genome Aggregation Database	East Asian	Sub	1606	G=0.184	A=0.816
The Genome Aggregation Database	Europe	Sub	18370	G=0.006	A=0.993
The Genome Aggregation Database	Global	Study-wide	29708	G=0.177	A=0.822
The Genome Aggregation Database	Other	Sub	302	G=0.000	A=1.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.272	A=0.727
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.003	A=0.997

PMID	Title	Author	Journal
29478698	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Cheng Z	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs10738186	1E-06	Opioid dependence	29478698

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	10761937	10761997	E081	8523
chr9	10764176	10765098	E081	10762
chr9	10773079	10774543	E082	19665
chr9	10774621	10774795	E082	21207
chr9	10774971	10775021	E082	21557

rs10738186