rs10769847

Homo sapiens
T>C
LOC283299 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0457 (13690/29932,GnomAD)
C=0401 (11689/29118,TOPMED)
C=0477 (2387/5008,1000G)
T==0456 (1756/3854,ALSPAC)
T==0455 (1686/3708,TWINSUK)
chr11:7901104 (GRCh38.p7) (11p15.4)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
2 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.7901104T>C
GRCh37.p13 chr 11NC_000011.9:g.7922651T>C
GRCh38.p7 chr 11 novel patch HSCHR11_1_CTG1_2NW_011332695.1:g.132098T>C
GRCh38.p7 chr 11 alt locus HSCHR11_1_CTG5NT_187583.1:g.132605T>C

Gene: LOC283299, uncharacterized LOC283299(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC283299 transcriptNR_036678.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.819C=0.181
1000GenomesAmericanSub694T=0.540C=0.460
1000GenomesEast AsianSub1008T=0.237C=0.763
1000GenomesEuropeSub1006T=0.446C=0.554
1000GenomesGlobalStudy-wide5008T=0.523C=0.477
1000GenomesSouth AsianSub978T=0.490C=0.510
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.456C=0.544
The Genome Aggregation DatabaseAfricanSub8714T=0.760C=0.240
The Genome Aggregation DatabaseAmericanSub836T=0.580C=0.420
The Genome Aggregation DatabaseEast AsianSub1614T=0.237C=0.763
The Genome Aggregation DatabaseEuropeSub18466T=0.467C=0.533
The Genome Aggregation DatabaseGlobalStudy-wide29932T=0.542C=0.457
The Genome Aggregation DatabaseOtherSub302T=0.420C=0.580
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.598C=0.401
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.455C=0.545
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs107698472.28E-06alcohol consumption23953852

eQTL of rs10769847 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10769847 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr1179492487949467E07426597
chr1179494767949625E07426825