rs10802023

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0398 (11891/29874,GnomAD)
C=0350 (10214/29118,TOPMED)
C=0307 (1537/5008,1000G)
C=0481 (1854/3854,ALSPAC)
C=0487 (1807/3708,TWINSUK)
chr1:118336033 (GRCh38.p7) (1p12)
AD
GWASdb2
1   publication(s)
See rs on genome
12 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.118336033T>C
GRCh37.p13 chr 1NC_000001.10:g.118878656T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.809C=0.191
1000GenomesAmericanSub694T=0.730C=0.270
1000GenomesEast AsianSub1008T=0.653C=0.347
1000GenomesEuropeSub1006T=0.557C=0.443
1000GenomesGlobalStudy-wide5008T=0.693C=0.307
1000GenomesSouth AsianSub978T=0.690C=0.310
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.519C=0.481
The Genome Aggregation DatabaseAfricanSub8708T=0.772C=0.228
The Genome Aggregation DatabaseAmericanSub836T=0.740C=0.260
The Genome Aggregation DatabaseEast AsianSub1588T=0.627C=0.373
The Genome Aggregation DatabaseEuropeSub18440T=0.514C=0.485
The Genome Aggregation DatabaseGlobalStudy-wide29874T=0.602C=0.398
The Genome Aggregation DatabaseOtherSub302T=0.510C=0.490
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.649C=0.350
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.513C=0.487
PMID Title Author Journal
21703634A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.Wang KSJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs108020232.18E-05alcohol dependence21703634

eQTL of rs10802023 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10802023 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1118837539118838215E068-40441
chr1118837475118837532E071-41124
chr1118837539118838215E071-40441
chr1118837539118838215E072-40441
chr1118837247118837389E074-41267
chr1118837475118837532E074-41124
chr1118837539118838215E074-40441
chr1118837539118838215E082-40441
chr1118876584118876811E082-1845
chr1118881430118881685E0822774
chr1118881689118881885E0823033
chr1118882125118882365E0823469