SNP Detail Info-rs10802867

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

FMN2 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0274 (8200/29886,GnomAD)
A==0230 (6696/29116,TOPMED)
A==0216 (1080/5008,1000G)
A==0341 (1316/3854,ALSPAC)
A==0364 (1349/3708,TWINSUK)

Position: chr1:240401213 (GRCh38.p7) (1q43)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 10 Enhancers around

Promoter: 0 Promoter around

Molecule type	Change	Amino acid[Codon]	SO Term
FMN2 transcript variant 1	NM_001305424.1:c.	N/A	Intron Variant
FMN2 transcript variant 2	NM_020066.4:c.	N/A	Intron Variant
FMN2 transcript variant X4	XM_017001839.1:c.	N/A	Intron Variant
FMN2 transcript variant X5	XM_017001840.1:c.	N/A	Intron Variant
FMN2 transcript variant X6	XM_017001841.1:c.	N/A	Intron Variant
FMN2 transcript variant X7	XM_017001842.1:c.	N/A	Intron Variant
FMN2 transcript variant X8	XM_017001843.1:c.	N/A	Intron Variant
FMN2 transcript variant X3	XM_011544237.2:c.	N/A	Genic Downstream Transcript Variant
FMN2 transcript variant X1	XM_017001837.1:c.	N/A	Genic Downstream Transcript Variant
FMN2 transcript variant X2	XM_017001838.1:c.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.046	G=0.954
1000Genomes	American	Sub	694	A=0.380	G=0.620
1000Genomes	East Asian	Sub	1008	A=0.158	G=0.842
1000Genomes	Europe	Sub	1006	A=0.372	G=0.628
1000Genomes	Global	Study-wide	5008	A=0.216	G=0.784
1000Genomes	South Asian	Sub	978	A=0.230	G=0.770
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.341	G=0.659
The Genome Aggregation Database	African	Sub	8706	A=0.082	G=0.918
The Genome Aggregation Database	American	Sub	834	A=0.320	G=0.680
The Genome Aggregation Database	East Asian	Sub	1620	A=0.190	G=0.810
The Genome Aggregation Database	Europe	Sub	18424	A=0.369	G=0.630
The Genome Aggregation Database	Global	Study-wide	29886	A=0.274	G=0.725
The Genome Aggregation Database	Other	Sub	302	A=0.340	G=0.660
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.230	G=0.770
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.364	G=0.636

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs10802867	0.00028	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	240524960	240525146	E081	-39367
chr1	240525327	240525835	E081	-38678
chr1	240525909	240526027	E081	-38486
chr1	240526182	240526447	E081	-38066
chr1	240526829	240526918	E081	-37595
chr1	240565112	240565344	E081	599
chr1	240572236	240572315	E081	7723
chr1	240524960	240525146	E082	-39367
chr1	240525327	240525835	E082	-38678
chr1	240565735	240565923	E082	1222

rs10802867